Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0132 ATGACAACAAAGGGAACGAAAAGGATCGAATGCGTCGATTCTCGTGCTGCTTCCGTTCTTATTCGTGCCAGCGATGGCAGTGCTTTCGCTAAATGTGGTGAGTGCAAGAAAGATGTTCCTATGGCACTCATTGACATGCACGATTGTAGCCTTGAAGCCAAAATCAAAATGAATCTTAATGCTCAAGTTATTGAGCAAGCTGCTCAAGCGAAGAAACCTGAGAGGAAGAAGCCGAAATCGACAGAACCAAGTGCTAAAAGGGCTAAGACTGGGAAAGGGAAAAAGGTTAAGGATCCTAACGCGCCCAAGCGTCCTCCGACTGCTTTCTTTGTTTTCATGGATGATTTTAGAAAAGAATTTAAGGAAGCTAATCCTGATTCAAAGGATGTTAAAAGGGTTGGTAAAGAGGCTGGTGAGAAGTGGAGGTCTTTGACTGATGAAGAGAAGAAGCCTTATTTGGATAGAGTTATTGAACTGAAGGCAGAATATGAGAAGGCTATGGAAATCTATAATGCTACTAAAAAGGAAGATCAAGATCAAGAAGAGGGGTCTGATAAGGAAGCCCCAGCAGCAGAAGAGGTGGAAGAGTTAACAGACGAGGAGTAG 606 0.4323 MTTKGTKRIECVDSRAASVLIRASDGSAFAKCGECKKDVPMALIDMHDCSLEAKIKMNLNAQVIEQAAQAKKPERKKPKSTEPSAKRAKTGKGKKVKDPNAPKRPPTAFFVFMDDFRKEFKEANPDSKDVKRVGKEAGEKWRSLTDEEKKPYLDRVIELKAEYEKAMEIYNATKKEDQDQEEGSDKEAPAAEEVEELTDEE* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0132 201 Coils Coil 156 180 - -
Tpr1g0132 201 MobiDBLite consensus disorder prediction 171 191 - -
Tpr1g0132 201 MobiDBLite consensus disorder prediction 171 201 - -
Tpr1g0132 201 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Tpr1g0132 201 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 190 - -
Tpr1g0132 201 MobiDBLite consensus disorder prediction 69 101 - -
Tpr1g0132 201 SMART hmgende2 101 172 IPR009071 -
Tpr1g0132 201 SUPERFAMILY HMG-box 89 171 IPR036910 -
Tpr1g0132 201 Gene3D High mobility group box domain 85 187 IPR036910 -
Tpr1g0132 201 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 190 - -
Tpr1g0132 201 MobiDBLite consensus disorder prediction 123 144 - -
Tpr1g0132 201 CDD HMGB-UBF_HMG-box 102 168 - -
Tpr1g0132 201 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Tpr1g0132 201 MobiDBLite consensus disorder prediction 66 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0132 Tpr-Chr1 1091342 1092908 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tpr1g0132 HMG_box 5.1e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0132 K25507 - gmx:100306558 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0132 1 1091342 1092908 Tpr1g0132 1 1091342 1092908 ECH