Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0119 ATGAAGAGAGAAAGAGAAAGTGATGTTAATACTAATAGCACAACCATGGCTAAATACTTGATGTTACTTTCTGGTGGAGAATATGATCAAGTGAATTACTCTTCAAATTTCAACAACCGCGTCTTCGAGTGCAAGACATGTAAAAGACAATTCTCGTCATTTCAAGCGTTAGGAGGACACCGAGCGAGTCACAAGAAACCGCGGTTGATGGAGATGATGAGTGATGGTGATGATCATTCACTTGCAACAAAAACAAAGGCTAAAACACATGAATGTTCAATTTGTGGATTGGAATTTGCAATAGGACAAGCTTTGGGTGGTCACATGAGAAGACATAGAAAAACAGCATCAATAGTTTCAAATAATTCAAATGGAAGCATGCAGAATTTTATTACTACAACTACTACTACTAGTAGCAATAGTGGTGGCAGTACTATTGATAATAGTACTAATACTAATTCAGCAAAGAGGAACAAGGGGAACACCAATAATAGATTTTTGTTTCTTGATTTGAATTTGACACCATTAGAGAATGATTTGAAGTTTTTGAAGATTGGACAATCAACTCTTAATTTGGTGGATTGTTTCAATTGA 594 0.3552 MKRERESDVNTNSTTMAKYLMLLSGGEYDQVNYSSNFNNRVFECKTCKRQFSSFQALGGHRASHKKPRLMEMMSDGDDHSLATKTKAKTHECSICGLEFAIGQALGGHMRRHRKTASIVSNNSNGSMQNFITTTTTTSSNSGGSTIDNSTNTNSAKRNKGNTNNRFLFLDLNLTPLENDLKFLKIGQSTLNLVDCFN* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0119 197 PANTHER ZINC FINGER PROTEIN ZAT5 15 183 - -
Tpr1g0119 197 MobiDBLite consensus disorder prediction 135 158 - -
Tpr1g0119 197 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Tpr1g0119 197 SUPERFAMILY beta-beta-alpha zinc fingers 40 112 IPR036236 -
Tpr1g0119 197 Gene3D Classic Zinc Finger 40 112 - -
Tpr1g0119 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Tpr1g0119 197 SMART c2h2final6 90 112 IPR013087 -
Tpr1g0119 197 SMART c2h2final6 42 64 IPR013087 -
Tpr1g0119 197 Pfam C2H2-type zinc finger 90 114 - -
Tpr1g0119 197 Pfam C2H2-type zinc finger 41 67 - -
Tpr1g0119 197 PANTHER ZINC FINGER PROTEIN ZAT12 15 183 - -
Tpr1g0119 197 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Tpr1g0119 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0119 Tpr-Chr1 1002245 1003348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0119 1 194 C2H2 Transcription Factor Family AT2G37430 37.000 5.64e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g0119 zf-C2H2_6 7.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0119 - - gmx:100816598 191.045