Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0115 ATGGTTCTATCAAAGAAGAAGCTTAAACAGAAGCTTAGAACTGAATTAACCCTAAACCAAATCAATGCTGAATCTAATCCTCCTTCTTCATCTTCCAACTCTCTTAAACATCATATTAACTCTTCCATCAACAAACCCATTTTGTCTAAGAGAGAAAAACTCCGAAAGATTCGACCTTTACAACAACCCAATGAAAATGAAGGAACCAAAAACAATGAAATTGGGATTGAGGGTTTGGAAAAGAACAACATTAAAAAGAGAAAAAGGAATGATGTTGATGTTGTGGCTAACGAGGTTGTTGTTGTTAAGGATACCAACAAATCAGTGAAAAAGAATGATGGTGATGTTGTTGTGGCTAATGAAGTTGTCGTTAAGAGAGTAAAACAGAGAGTAAAACCCCGATGGATTCGTGAGGATGAAGTAACTGAAAAAATCAATGAAATTGGGACTGAGGGTTTGGAAAAGATGAAGATTAGAAAGAGAAAAAGAGTGAAACCAAATGATGGTGATGTTGTGGCTAATGAGGTTGTTGCTGTTAAGGATACTGTTAAGGTTATTAGCAAATCAATGAAAAAGAAGGAGCAGCAAAAGAAGAAGAATATGCAGAAGAAGAATAGAAAGAAGAACAAAGCTGCAGAGGAAAATGGCAAAACTGTAGAGGCAAGTTCCAAAGTTGCAGAGGAAAATGGTTCTAATCACCAAGAGGAATTGCCACAATCTAATGGATTGGCTAACACCAATATCACTGCCAGTCAAGAAAATGGTGATGCTTCTACAAAAGTTTATGTTGGAGGAATTCCCTACTATTCAAGTGAGGATGACATTCGAAGTTATTTTGAAGGCTGTGGCACCATCACTGAAATTAATTGCATGACTTTTCCTGACACTGGCAAGTTTAGAGGGATTGCGATTATTAGTTATAAGACTGAAGCAGCAGCCAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTTTTTCTTAGAATTCAACCTTATAAAGCAACTCAAGCAACCCGGTTTACTCCGGAATTGAAGGAGGGATATAATAGAATATATGTTGGAAGTTTATCATGGGAAATAACAGAGGAAGAGCTGAGAAAATTCTTCTCAAATTGCAATATAAAGTCCATACGATTGGGTACGGACAAGGAAACGGGAGACTTCCGAGGGTATGCTCATGTAGATTTCAGTGATAGTAAGTCACTCAAGACAGCACTTGCATTGGACCAGAGTGTCTTGTTTGGAAGGCCTGTCAGAATAAGCTGTGCAGTTCCGTTGAAGAAAAAACCTGACGCGGGTGAAAAATCAGTCGCAGATTCTAAACAAGGTGCAGGTGAAAAATCAGTTGCAGGTTCTAAACCAGGTGCTGTTGAAAAATCAGTAGCAGGTTCAGGTGAAAAATCAGTTGCAAGTTCTAAACCAGTTTCAGGTGAAAAATCAGTTGCAGGTTCTAAACCAGATGCAGGTGAAAAATCAGCTGCAGGCGAGAAACCAGATGCTGGAGAAAAAGAAACTGTTGAGAAACCGCCAAGTTCCGTTGTAAGTGGTGGCAAGAGGAAGAATAGGATGTGCTACGGTTGTCGTCAAAAAGGACATAATCTCTCAGAATGCCCAAACCAACAAGCAGTTGCCTCTGCTACAATCTAA 1653 0.3938 MVLSKKKLKQKLRTELTLNQINAESNPPSSSSNSLKHHINSSINKPILSKREKLRKIRPLQQPNENEGTKNNEIGIEGLEKNNIKKRKRNDVDVVANEVVVVKDTNKSVKKNDGDVVVANEVVVKRVKQRVKPRWIREDEVTEKINEIGTEGLEKMKIRKRKRVKPNDGDVVANEVVAVKDTVKVISKSMKKKEQQKKKNMQKKNRKKNKAAEENGKTVEASSKVAEENGSNHQEELPQSNGLANTNITASQENGDASTKVYVGGIPYYSSEDDIRSYFEGCGTITEINCMTFPDTGKFRGIAIISYKTEAAAKRALALDGADMGGLFLRIQPYKATQATRFTPELKEGYNRIYVGSLSWEITEEELRKFFSNCNIKSIRLGTDKETGDFRGYAHVDFSDSKSLKTALALDQSVLFGRPVRISCAVPLKKKPDAGEKSVADSKQGAGEKSVAGSKPGAVEKSVAGSGEKSVASSKPVSGEKSVAGSKPDAGEKSAAGEKPDAGEKETVEKPPSSVVSGGKRKNRMCYGCRQKGHNLSECPNQQAVASATI* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0115 550 MobiDBLite consensus disorder prediction 191 206 - -
Tpr1g0115 550 Gene3D - 341 434 IPR012677 -
Tpr1g0115 550 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 427 IPR000504 GO:0003723
Tpr1g0115 550 MobiDBLite consensus disorder prediction 222 241 - -
Tpr1g0115 550 MobiDBLite consensus disorder prediction 187 241 - -
Tpr1g0115 550 Gene3D - 180 340 IPR012677 -
Tpr1g0115 550 MobiDBLite consensus disorder prediction 207 221 - -
Tpr1g0115 550 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 129 548 - -
Tpr1g0115 550 CDD RRM1_PHIP1 261 332 IPR034361 -
Tpr1g0115 550 ProSiteProfiles Zinc finger CCHC-type profile. 526 541 IPR001878 GO:0003676|GO:0008270
Tpr1g0115 550 MobiDBLite consensus disorder prediction 20 52 - -
Tpr1g0115 550 CDD RRM2_PHIP1 352 423 IPR034362 -
Tpr1g0115 550 MobiDBLite consensus disorder prediction 20 47 - -
Tpr1g0115 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 327 IPR000504 GO:0003723
Tpr1g0115 550 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 353 420 IPR000504 GO:0003723
Tpr1g0115 550 Coils Coil 190 214 - -
Tpr1g0115 550 MobiDBLite consensus disorder prediction 492 508 - -
Tpr1g0115 550 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 336 IPR000504 GO:0003723
Tpr1g0115 550 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 129 548 - -
Tpr1g0115 550 SUPERFAMILY RNA-binding domain, RBD 344 432 IPR035979 GO:0003676
Tpr1g0115 550 SMART rrm1_1 352 423 IPR000504 GO:0003723
Tpr1g0115 550 SMART rrm1_1 260 332 IPR000504 GO:0003723
Tpr1g0115 550 SUPERFAMILY RNA-binding domain, RBD 234 340 IPR035979 GO:0003676
Tpr1g0115 550 MobiDBLite consensus disorder prediction 433 524 - -
Tpr1g0115 550 SUPERFAMILY Retrovirus zinc finger-like domains 517 544 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0115 259 425 Eukaryotic Initiation Factors Gene Family AT2G36660 28.022 1.02e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0115 - - mtr:MTR_1g115375 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0115 1 983892 987305 Tpr1g0115 1 983892 987305 ECH