Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0096 ATGGCAAGGATCAAGGTTCATGAGTTGAGGCAGAAAACCAAAGCTGATCTTTTGGCTCAGCTCAAAGACCTCAAGGCTGAACTCGCTTTGCTCCGTGTTGCTAAGGTCACCGGTGGCGCACCTAACAAGCTCTCCAAGATTAAGGTGGTGAGACTTTCCATTGCTCAGGTTTTGACAGTGATTTCTCAGAAGCAAAAGGCAGCATTGAGGGAGGTGTACAAGAACAAGAAATACTTGCCACTCGATCTTCGCCCAAAGAAGACCAGAGCTATTCGCAGAAGGCTCACCAAGCACCAGGCCTCATTGAAGACCCAGAGGGAGCAGAAAAAGGAGACATATTTCCCATTGAGGAAATATGCTATTAAAGCATAG 372 0.4704 MARIKVHELRQKTKADLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTQREQKKETYFPLRKYAIKA* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0096 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 122 IPR045059 GO:0000463|GO:0022625
Tpr1g0096 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Tpr1g0096 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Tpr1g0096 123 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Tpr1g0096 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Tpr1g0096 123 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 122 - -
Tpr1g0096 123 Coils Coil 14 34 - -
Tpr1g0096 123 Gene3D - 78 123 - -
Tpr1g0096 123 CDD Ribosomal_L29_HIP 8 64 - -
Tpr1g0096 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0096 Tpr-Chr1 860932 862784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0096 1 122 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 88.525 5.71e-73 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0096 K02918 - sly:101256286 202.601