Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0095 ATGCAGCCATACGGAGATGTTGATTCCACTTTGAGGGCCATCGCCGGTCGTGCCGAGGGATTCGGCCGCCACGCCATCGGTGGTCTCCACGGTGCTCTCTATTTGGTTACCTCCCTTTCAGATGATGGTCCTGGTTCCCTTCGCGAAGGATGTCGTAGACAGGAGCCGCTGTGGATTGTTTTTGAAGTTTCAGGTACAATTCATCTTTCATCATACCTGAGTGTGTCCTCTAATAAGACAGTTGATGGAAGAGGCCAGAGGGTTAAATTGACCGGGAAAGGCTTAAGGCTGAAAGAATGTGAGAACATAATTATATGCAACCTTGAGTTTGAGGGGGGAAGGGGTCATGATGTAGATGGGATTCAAATCAAACCAAATTCTAGGAATATTTGGATAGACCGTTGCAGCCTCCGAGATTATGATGACGGCCTTATAGACATCACAAGACAAAGTACGGATATCACTGTATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTCATTGGAGCCGACCCAACACATGTCGGTGATAGATGCATCCGGGTGACGATTCATCATTGTTTCTTTGATGGAACGAACCAGAGACAGCCTCGTTTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGAAAGTATATGCAATTTGTGCTAGTGTTGAGGCCCAGGTGACTTTGCTGCTATCATCCCGTGCATTTCATTTTCTTATTTTACATTCTAATTTATGTGCAGCAATTGTGGAGATAGCTGATTTCTCTAAAATCATTTTACAGATATACTCCCAATGTAACATATATGAAGCAGGAGATAAGAAAAAGGCTTATGAATTTTATACCGAGAAGGCTGCGGACAAAGAAGAGGCGAAGTCTGGCATCATAATATCTGAAGGAGACATGCTTCTGAATGGTGCTCAGCCATGCTTGCTAACAGAATATAAAGAATCTGTTTTCCATCCTAGTGAATATTACTCAACTTGGACAATGGAACCTGCTACACATTCTCTCAGAGAGGTTATCCAGTTATGTACAGGTTGGCAGTCCCTTTGCAGGCCAGTAGACAATATGGTAATGAACTAG 1092 0.4341 MQPYGDVDSTLRAIAGRAEGFGRHAIGGLHGALYLVTSLSDDGPGSLREGCRRQEPLWIVFEVSGTIHLSSYLSVSSNKTVDGRGQRVKLTGKGLRLKECENIIICNLEFEGGRGHDVDGIQIKPNSRNIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTNQRQPRLRFGKVHLYNNYTRNWKVYAICASVEAQVTLLLSSRAFHFLILHSNLCAAIVEIADFSKIILQIYSQCNIYEAGDKKKAYEFYTEKAADKEEAKSGIIISEGDMLLNGAQPCLLTEYKESVFHPSEYYSTWTMEPATHSLREVIQLCTGWQSLCRPVDNMVMN* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0095 363 Pfam Pectate lyase 72 228 IPR002022 -
Tpr1g0095 363 SMART amb_all 64 244 IPR002022 -
Tpr1g0095 363 PRINTS Pollen allergen Amb family signature 17 34 IPR018082 -
Tpr1g0095 363 PRINTS Pollen allergen Amb family signature 197 216 IPR018082 -
Tpr1g0095 363 Gene3D - 4 232 IPR012334 -
Tpr1g0095 363 PANTHER PECTATE LYASE 18-RELATED 3 229 IPR045032 GO:0030570
Tpr1g0095 363 PANTHER PECTATE LYASE 18-RELATED 258 355 IPR045032 GO:0030570
Tpr1g0095 363 PANTHER PECTATE LYASE 3 229 - -
Tpr1g0095 363 PANTHER PECTATE LYASE 258 355 - -
Tpr1g0095 363 SUPERFAMILY Pectin lyase-like 15 356 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0095 Tpr-Chr1 857149 859831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0095 41 361 Polysaccharide Lyase AT3G55140 71.739 1.85e-173 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0095 K01728 - gmx:100802068 585.104