Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0093 ATGAAAAAGTGTTTGTGTTTGATAAAAATGATTTCAGACACCGACTGTATGGAACATTCCACCGCGGTCACTACCGGCGGCGGAGAAAAAACCTCCGCATATTCCGATAAAGATCACCCCACACCTTCGGCAGCTCGAAATATTGTGATGTCTTCAAGAGATAACGATTCTCACTTCAGCGGTGGTGGCATCAGCTTTCTATCTGGAAGTCGAAATGGAAAGATCAGCTATGGTTATTCTAGTATCAAGGGTAAAAGATCTTCAATGGAGGATTTCTTTGAGACCAAAATATCAGAGGTTGATGGTCAGATGGTTGCCTTTTTTGGTGTTTTTGATGGTCATGGAGGATCACGGACTGCAGAATACCTGAAACATAATTTATTCAAGAACTTGAGTAGCCATCCCGACTTTATCAGAGACACAAAGACAGCTATTGTTGAAGCATTTAAACAAACAGACGTTGATTACCTCAATGAGGAAAAGGGACATCGAAGGGATGCTGGGTCCACTGCATCAACAGCTTTGTTGTTGGGCGACCGAATTCTTGTTGCCAATGTTGGTGATTCCCGAGTAGTTGCATCTAGAGCTGGTTTAGCTGTTCCTTTATCTGTTGATCACAAACCTGATAGATCTGATGAGCGTCAAAGGATTGAACGGGCTGGGGGATTTGTTATCTGGGCAGGAACATGGAGGGTTGGTGGTGTTCTTGCTGTTTCCCGTGCATTTGGAGACAAGCTTCTTAAGCCGTATGTTGTTGCTGACCCAGAAATTCAGGAGGAAGATGTTGAAGGAGTGGATTTTATAATAGTTGCAAGTGATGGTCTTTGGAATGTCATATCAAACAAGGAGGCCGTGTCTTTGGTACAAAATATCACTGATGCAGAAGTGGCATCTAAAGAACTTATTAAAGAAGCTTATACTCGAGGAAGCTCAGACAACATCACTTGTGTTGTTGTTCGATTTGATCCATCTTGA 975 0.4267 MKKCLCLIKMISDTDCMEHSTAVTTGGGEKTSAYSDKDHPTPSAARNIVMSSRDNDSHFSGGGISFLSGSRNGKISYGYSSIKGKRSSMEDFFETKISEVDGQMVAFFGVFDGHGGSRTAEYLKHNLFKNLSSHPDFIRDTKTAIVEAFKQTDVDYLNEEKGHRRDAGSTASTALLLGDRILVANVGDSRVVASRAGLAVPLSVDHKPDRSDERQRIERAGGFVIWAGTWRVGGVLAVSRAFGDKLLKPYVVADPEIQEEDVEGVDFIIVASDGLWNVISNKEAVSLVQNITDAEVASKELIKEAYTRGSSDNITCVVVRFDPS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0093 324 CDD PP2Cc 75 321 IPR001932 -
Tpr1g0093 324 SMART PP2C_4 65 319 IPR001932 -
Tpr1g0093 324 PANTHER ALPHABET, ISOFORM E-RELATED 40 323 - -
Tpr1g0093 324 Gene3D - 69 324 IPR036457 -
Tpr1g0093 324 PANTHER PROTEIN PHOSPHATASE 2C 11-RELATED 40 323 - -
Tpr1g0093 324 Pfam Protein phosphatase 2C 77 314 IPR001932 -
Tpr1g0093 324 ProSitePatterns PPM-type phosphatase domain signature. 107 115 IPR000222 GO:0043169
Tpr1g0093 324 ProSiteProfiles PPM-type phosphatase domain profile. 76 321 IPR001932 -
Tpr1g0093 324 SUPERFAMILY PP2C-like 69 322 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0093 Tpr-Chr1 825110 829512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0093 48 324 PP2C-type Phosphatase Gene Family AT1G43900 73.285 4.36e-154 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0093 K17506 - gmx:100776867 522.702