Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr1g0091 | ATGGCTGCTATGAGAATAAAGGACGATTTACAGCGAGGAAGCATCGATATGGACTTGGAGACAACGGAGGGTGTGAAGACGTTTAAAAGTTTTGAGGAGATGGGAATCAAAGACAATTTACTCCGTGGAATCTACCAATACGGTTTTGACAAACCATCTGCGATTCAACAACGTGCTGTTGCGCCTATCATTCAAGGTCGCGACGTCATTGCTCAAGCTCAATCTGGAACTGGCAAGACTTCCATGATTGCTCTAACTGTTTGCCATCTTGTGGATACTTCAGTGAGAGAGGTGCAGGCTTTGATTGTGTCGCCGACAAGGGAACTAGCCTCACAAACTGAAAAAGTTATATCCGCTATTGGAGATTACACAAATATTAGAGCCCATGCTTGTGTCGGAGGGAAAAGTGTGGGAGAAGATATAAGGAAACTTGAACACGGAGGAGTTCATGTAGTGTCTGGAACTCCCGGTCGAGTTCTTGACATGATCAAAAGGAGAACATTGGGCACAAGAGCTATCAAGTTGCTTGTTCTGGATGAATCTGATGAAATGCTGAGCAGAGGTTTTAAAGATCAAATTTATGATGTGTACAGATATCTCCCACCCGATCTTCAGGTTGTCCTGGTTTCCGCTACGCTACCTCATGATATTTTGGAGATGACAAATAAGTTCATGACAGATCCTGTCCGAATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAGCAATTTTTCGTTGCCGTTGAAAGGGAGGAATGGAAGTTTGACACCCTGTGCGATCTTTATGATATTCTTACCATTACTCAAGCTGTCATATTCTGTAACACTAGGCGAAAGGTGGACTGGTTAACTGAAAAATTGCGAAACAATAATTTCACCGTCTCCTCGATGCACAGTGACATGCCTCAAAGAGAAAGAGATGCAATTATGGGAGAATTTCATGCGGGAACAACCCGAGTATTGATAGCAACAGATGTTTGGGCTCGTGGCATTGATGTGCAGCAGGTTTCCCTAGTTATTAATTACGATCTTCCCAATAATCGGGAGCTGTATGTTCATCGCATTGGCCGTTCTGGACGTTTTGGGAGAAAGGGTGTTGCAATAAATTTTGTGAAAAATGATGATATCAAGATTCTAAGAGATATTGAACAATATTACAGTACGCAGATTATTGATCTGCCATCAAATGTTGCTGATCTTATATAA | 1212 | 0.4216 | MAAMRIKDDLQRGSIDMDLETTEGVKTFKSFEEMGIKDNLLRGIYQYGFDKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCHLVDTSVREVQALIVSPTRELASQTEKVISAIGDYTNIRAHACVGGKSVGEDIRKLEHGGVHVVSGTPGRVLDMIKRRTLGTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLVSATLPHDILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDILTITQAVIFCNTRRKVDWLTEKLRNNNFTVSSMHSDMPQRERDAIMGEFHAGTTRVLIATDVWARGIDVQQVSLVINYDLPNNRELYVHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIIDLPSNVADLI* | 404 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr1g0091 | 403 | PANTHER | BNAC03G41130D PROTEIN | 16 | 396 | - | - | |
| Tpr1g0091 | 403 | CDD | SF2_C_DEAD | 243 | 373 | - | - | |
| Tpr1g0091 | 403 | Pfam | Helicase conserved C-terminal domain | 257 | 364 | IPR001650 | - | |
| Tpr1g0091 | 403 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 60 | 231 | IPR014001 | - | |
| Tpr1g0091 | 403 | SMART | helicmild6 | 283 | 364 | IPR001650 | - | |
| Tpr1g0091 | 403 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 29 | 57 | IPR014014 | GO:0003724 | |
| Tpr1g0091 | 403 | Gene3D | - | 239 | 403 | IPR027417 | - | |
| Tpr1g0091 | 403 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 242 | 403 | IPR001650 | - | |
| Tpr1g0091 | 403 | CDD | DEADc_EIF4AIII_DDX48 | 31 | 232 | - | - | |
| Tpr1g0091 | 403 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 16 | 396 | - | - | |
| Tpr1g0091 | 403 | Pfam | DEAD/DEAH box helicase | 54 | 217 | IPR011545 | GO:0003676|GO:0005524 | |
| Tpr1g0091 | 403 | SMART | ultradead3 | 48 | 246 | IPR014001 | - | |
| Tpr1g0091 | 403 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 97 | 386 | IPR027417 | - | |
| Tpr1g0091 | 403 | Gene3D | - | 19 | 238 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr1g0091 | Tpr-Chr1 | 816558 | 818963 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr1g0091 | 19 | 403 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 83.636 | 0.0 | 681 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr1g0091 | K13025 | - | gmx:100800020 | 701.049 |