Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0090 ATGGCTGCGATGAGAATAAAAGATGATTTGCTGCGAGGAAGATTCGATATGGAGACAACAGATGTCAGAATCCTTGTAAAACGCCATGAATTGACATTAAGGGGCATCAAACAATTTTTCGTTGCCGTTGAAAGAGAGGAATGGAAGTTTGACACACTGTGTGATCTTTATGATATTCTTACCATTACTCAAGCTGTTATATTCTGTAACACCAGGCGAAAGGTTGAATGGTTAACTGAAAAATTGCGGAACAATAATTTCACCGTCTTCTCAATGCATGGTGACATGCCTCAAAGAGAAAGAGATGCAATTATGCATGAATTTCGTAAGGGAACAACCCGAGTATTGATAACAACAGATGTTTCGGCTCGTGGCCTTGACGTGCAACAAGTTTCTCTAGTTATTAATTACGACCTTCCGAGAAATCGAGAGTTGTATGGTCATCGGATCGGCCGTTCTCGACCTTTTGGGCGGAAGGGTGTTGCAATAAATTTTGCGAAAAATGATGATATCAAGATCCTGAGAGATGTTGAGCAATACTACAATACTCAAATTTATGATCTGCCATCAAATGTTGCTGATCTTATCTAA 591 0.3959 MAAMRIKDDLLRGRFDMETTDVRILVKRHELTLRGIKQFFVAVEREEWKFDTLCDLYDILTITQAVIFCNTRRKVEWLTEKLRNNNFTVFSMHGDMPQRERDAIMHEFRKGTTRVLITTDVSARGLDVQQVSLVINYDLPRNRELYGHRIGRSRPFGRKGVAINFAKNDDIKILRDVEQYYNTQIYDLPSNVADLI* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0090 196 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 35 196 IPR001650 -
Tpr1g0090 196 Gene3D - 28 196 IPR027417 -
Tpr1g0090 196 SMART helicmild6 76 156 IPR001650 -
Tpr1g0090 196 PANTHER EUKARYOTIC INITIATION FACTOR 4A-III 21 189 - -
Tpr1g0090 196 Pfam Helicase conserved C-terminal domain 50 153 IPR001650 -
Tpr1g0090 196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 191 IPR027417 -
Tpr1g0090 196 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 189 - -
Tpr1g0090 196 CDD SF2_C_DEAD 36 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0090 Tpr-Chr1 815175 816344 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0090 19 196 Eukaryotic Initiation Factors Gene Family AT3G19760 80.899 1.37e-103 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0090 K13025 - gmx:100795032 306.99