Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0089 ATGTCTTTGGTGGCGAATGAAGAATTTCAGCACATTCTGCGTGTGCTGAACACAAACGTCGATGGGAAGCAGAAAATCATGTTCGCAATGACTTCCATCAAGGGTATTGGAAGACGATTTTCTAACATTTGCTGTAAAAAGGCTGATGTTGATATGAACAAGAGGGCTGGTGAGTTGAGTGCTGCGGAGTTGGATAATTTGATGACTGTGGTTGCAAATCCTCGTCAATTCAAGATTCCAGATTGGTTTTTGAATAGGAAGAAGGATTACAAGGATGGAAAGTACTCTCAAGTTGTGTCCAATGCTCTTGACATGAAGTTGAGAGATGATTTGGAAAGACTCAAGAAAATCAGAAACCACCGTGGTTTGAGGCACTACTGGGGCCTTCGTGTTCGTGGTCAGCATACCAAGACTACTGGACGCAGGGGAAAGACTGTCGGTGTCTCAAAGAAGCGTTAA 459 0.4357 MSLVANEEFQHILRVLNTNVDGKQKIMFAMTSIKGIGRRFSNICCKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0089 152 Gene3D - 1 80 - -
Tpr1g0089 152 SUPERFAMILY S13-like H2TH domain 13 152 IPR010979 GO:0003676
Tpr1g0089 152 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 1 152 - -
Tpr1g0089 152 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 152 - -
Tpr1g0089 152 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 5 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr1g0089 152 Gene3D 30s ribosomal protein s13, domain 2 92 142 IPR027437 -
Tpr1g0089 152 Pfam Ribosomal protein S13/S18 14 142 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr1g0089 152 ProSitePatterns Ribosomal protein S13 signature. 121 134 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr1g0089 152 Hamap 30S ribosomal protein S13 [rpsM]. 12 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tpr1g0089 152 ProSiteProfiles Ribosomal protein S13 family profile. 15 145 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0089 Tpr-Chr1 812826 814486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0089 1 152 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 95.395 1.07e-108 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0089 K02964 - gmx:100306474 298.13