Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0080 ATGTCAAATCGCATTGTAGCGGAGGAGGTTACTGATTCTTATTTTGATTATCTTGAAATGGACGAACTCAGGCGCGGCCGTGCAGCCAGTGAGATGCCAACTCTCGGACAGCTTCTCAAACATGTTGGTGACGTAAGGAAGGAGGTTACTGGTGATGGCAGTGAGACACCGGTGCATCATACTCTTGATGTTGGTGGAATAGAGACTCGTTCTCTTCCGTTTGTTCTTTCGTTTAACAACCTCACCTATAGTGTTAAAGTGAAAAACAAAACGAACATATTTAACCGTAGCCGTGCTCCTCCAGTGAATAGGGCTATGACACCGGCGGTTGGGGAGACGGCGTTCATAAAGAGTAAGACTCTTTTGAATGATATCTCTGGTGAAGCACGCGACGGTGAGATCATGGCGTTTCTCGGAGCCAGTGGCTCTGGGAAATCGACTTTGATCGATGCACTGGCAAACCGAATTGCAAAAGGAAAGTTGAAGGGAAGTGTGAAACTGAATGGTGAGTCGGTAGAGTCTAGTCTTCTTAAGGTAATTTCAGCCTATGTGATGCAAGATGATCTTCTCTTTCCAATGCTCACAGTAGAAGAAACTCTCACCTTTGCTGCTGAATTTCGATTACCACGATCACTGTCAAAATCAAAGAAAAATGCAAGAGTCCAAGCTTTAATTGAACAATTAGGACTCCGGAACGCTGCAAAAACAGTCATAGGAGACGAAGGTCACCGTGGAGTCTCTGGTGGAGAAAGGCGTCGAGTCTCAATTGGAATTGACATAATTCACGATCCAATTGTACTTTTCCTTGATGAACCAACCTCAGGGCTCGATTCTACAAGTGCATTCATGGTTGTGAAAGTGCTTCAGAGAATTGCACAAAGTGGAAGCATAGTTATCATGTCAATTCATCAACCAAGTTACAGAATCTTAGGTATTCTAGATCGAATGATCTTCTTATCGCGTGGCCAAGTAGTTTACAGCGGTTCACCATCGCAGTTACCTTCATACTTCGGAGAATTCGGCCATCCTATACCAGAAGGCGATAACCGAACAGAATTCGCATTAGACCTGATTCGGGAGCTAGAAGGTTCACCAGGAGGAACAAAAAGCTTAGTTGAATTCAACAAATCATGGCAAAGTATGACGAAGCTTCACAATTCCGATGCATCACACAACACAACGTCTTCACTATCGTTGAAAGAAGCAATCAGCGCAAGCATTTCGCGAGGAAAATTAGTTTCAGGCGCAACGGCTACAACAAATTCAAATCCAAGTCCAAACGCGACACCATCTTCTTTATCGTCGATGGTGCCAGCATATGCAAATCCGTTTTGGATTGAGTTATTAACGCTTTCAAAGCGTTCAATAACCAATACAAGACGAATGCCTGAACTATTTGGGATAAGATTAGGTGCTGTTGTGGTGACTGGTTTCATACTTGCGACAATGTTTTGGCAACTTGACAACACACCAAGAGGAGTTCAAGAAAGGCTTGGATTCTTTGCTTTTGCTATGTCAACTACTTTCTACACCACAGCAGATGCATTACCAATATTCATTCAAGAACGGTACATTTTCATGAGAGAAACCTCTCACAATGCTTATAGAAGATGGTCTTATGTTATTTCACATGCTATAGTTGCTTTACCTCCGTTGTTATTTCTCTCTTTAGCTTTTGCCTGTATAACCTTTTGGGCCGTTGGGCTTGATGGTGGATTCTCGGGCTTTTTGTTTTATTTTGTTATAATTTTTGCTTCGTTTTGGGCCGGGAATTCGTTTGTGTCTTTTCTATCAGGTGTGGTACCTCATGTGATGTTGGGGTATACTATAGTAGTTGCAATTCTTGCTTATTTCTTGCTATTTAGTGGGTTCTTTATTAATAGGGATAGGATCCCTAGGTATTGGATATGGTTCCATTACATATCTTTGGTTAAGTATCCTTATGAGGCTGTTTTGCAAAATGAATTTAGTGATGTAGCTAAGTGTTTTGTGAGGGGGGTGCAAATATTTGATAATTCACCACTTGCTTCTGTTCCTGATGCACTTAAGTTGAAATTATTGGATAGCATGAGTAACACTTTGGGAACCAAAATCACAGCTTCTACTTGTTTGACAACTGGTGTTGATTTGTTGAAGCAAAATGGGGTGATGGATTTGAGTAAATGGAATTTGGTGTGGATAACTGTGGCATGGGGTTTCTTCTTCAGAATTCTATTCTACTTGGCTTTGTTGGTGGGTAGCAAGAACAAGAGGGGTTGA 2259 0.4183 MSNRIVAEEVTDSYFDYLEMDELRRGRAASEMPTLGQLLKHVGDVRKEVTGDGSETPVHHTLDVGGIETRSLPFVLSFNNLTYSVKVKNKTNIFNRSRAPPVNRAMTPAVGETAFIKSKTLLNDISGEARDGEIMAFLGASGSGKSTLIDALANRIAKGKLKGSVKLNGESVESSLLKVISAYVMQDDLLFPMLTVEETLTFAAEFRLPRSLSKSKKNARVQALIEQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGILDRMIFLSRGQVVYSGSPSQLPSYFGEFGHPIPEGDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKLHNSDASHNTTSSLSLKEAISASISRGKLVSGATATTNSNPSPNATPSSLSSMVPAYANPFWIELLTLSKRSITNTRRMPELFGIRLGAVVVTGFILATMFWQLDNTPRGVQERLGFFAFAMSTTFYTTADALPIFIQERYIFMRETSHNAYRRWSYVISHAIVALPPLLFLSLAFACITFWAVGLDGGFSGFLFYFVIIFASFWAGNSFVSFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPRYWIWFHYISLVKYPYEAVLQNEFSDVAKCFVRGVQIFDNSPLASVPDALKLKLLDSMSNTLGTKITASTCLTTGVDLLKQNGVMDLSKWNLVWITVAWGFFFRILFYLALLVGSKNKRG* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0080 752 Pfam ABC transporter 122 274 IPR003439 GO:0005524
Tpr1g0080 752 Pfam ABC-2 type transporter 303 361 IPR043926 GO:0140359
Tpr1g0080 752 ProSitePatterns ABC transporters family signature. 246 260 IPR017871 GO:0005524
Tpr1g0080 752 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 105 346 IPR003439 GO:0005524
Tpr1g0080 752 PANTHER ABC TRANSPORTER G FAMILY MEMBER 16 34 745 - -
Tpr1g0080 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 341 IPR027417 -
Tpr1g0080 752 Pfam ABC-2 type transporter 448 656 IPR013525 GO:0016020|GO:0140359
Tpr1g0080 752 Gene3D - 112 338 IPR027417 -
Tpr1g0080 752 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 34 745 - -
Tpr1g0080 752 SMART AAA_5 131 323 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0080 Tpr-Chr1 730255 733458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0080 121 341 Calmodulin-binding Proteins AT2G36910 27.232 1.94e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0080 K05681 - gmx:100803658 1163.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0080 1 730255 733458 Tpr1g0080 1 730255 733458 ECH