Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0074 ATGGCGGGAATGAGAACAAGAGGATGCTTCTTCGAGACAACAGAGGGCGTAAAGACGATTACAACCTTCGAGGAGATGGGATTCAAAGACAATTTACTCCGTGGAATCTACCAATTCGGTTTCGATAAACCATCGCCGATTCAACAGCGCGCCGTTCTGCCTATCATTCAGGGTCGTGACGTCATCGCTCAGGCTCAATCTGGTACCGGCAAAACCTCCATGATTGCTCTAACTGTTTGCCAGCTTGTCGATACCTCCGTCAGAGAGGTGCAGGCCTTAATTGTGTCTCCGACGAGGGAACTGGCTTCACAAACTGAAAGAATTATATCGGCTATTGGGGATTTTGCAAACGTACAAGCGCATGCTTGTGTTGGAGGTAAAAGTGTGGGAGAAGATATAAGGAAACTTGAACACGGAGTTCATGTGGTGTCTGGAACTCCTGGTCGAGTATGTGACATGATCAAGAGGAGAACATTGCGCACAAAAGCTATCAAGTTGCTAGTTCTGGATGAATCTGATGAAATGCTGAGCAGAGGATTTAAAGATAAAATTTATGATGTGTATAGATATCTCCGACCCGATCTTCAGGTTTGCTTGATCTCTGCTACGCTGCCTCATGAAATTTTGGAGATGACAAATAAGTTTATGACAGATCCTGTCAGGATCCTTGTAAAACGTGATGAATTGGCGTTGGAGAGCATCAAGCAATATTTTGTTGCGGTTGAAAGGGAGGAATGGAAGTTTGATACTCTTTGTGATCTTTATGATCATGTTACCATCACTCAAGCTGTTGTATTCTGTAACACCAAGCAAAAGGTGGACTGGTTAGCTGAAAAAATGCGTAACAATAATTTCACCGTCTCATCAATGCACGGTGACATGCCTCAAAGAGAAAGAGATGCGATTATGGGAGAATTTTGTGCTGGAACAACCCGAGTATTGATAACAACCGATGTTTGGGCTCGTGGCCTTGATGTACAGCAGGTTTCGCTAGTTATTAATTATGATCTTCCCAATAATAGAGAGTTGTACATTCATCGGATAGGCCGTTCTGGACGTTTTGGGCGCAAGGGTATTGCAATAAATTTTGTGAAAAGCGATGATATCAACAGCTTGAGGGACATTGAGCAGTATTATGGTACTCAGATTGTTGATCTGCCAATGAATGTTGCTGATCTTATATAG 1185 0.4312 MAGMRTRGCFFETTEGVKTITTFEEMGFKDNLLRGIYQFGFDKPSPIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVCQLVDTSVREVQALIVSPTRELASQTERIISAIGDFANVQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTKAIKLLVLDESDEMLSRGFKDKIYDVYRYLRPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELALESIKQYFVAVEREEWKFDTLCDLYDHVTITQAVVFCNTKQKVDWLAEKMRNNNFTVSSMHGDMPQRERDAIMGEFCAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGIAINFVKSDDINSLRDIEQYYGTQIVDLPMNVADLI* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0074 394 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 222 IPR014001 -
Tpr1g0074 394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 377 IPR027417 -
Tpr1g0074 394 CDD SF2_C_DEAD 234 364 - -
Tpr1g0074 394 Pfam Helicase conserved C-terminal domain 247 355 IPR001650 -
Tpr1g0074 394 SMART helicmild6 274 355 IPR001650 -
Tpr1g0074 394 SMART ultradead3 40 237 IPR014001 -
Tpr1g0074 394 Pfam DEAD/DEAH box helicase 46 208 IPR011545 GO:0003676|GO:0005524
Tpr1g0074 394 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 21 49 IPR014014 GO:0003724
Tpr1g0074 394 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 9 387 - -
Tpr1g0074 394 PANTHER BNAC03G41130D PROTEIN 9 387 - -
Tpr1g0074 394 Gene3D - 226 394 IPR027417 -
Tpr1g0074 394 Gene3D - 9 225 IPR027417 -
Tpr1g0074 394 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 233 394 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0074 Tpr-Chr1 685264 689219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0074 11 394 Eukaryotic Initiation Factors Gene Family AT3G19760 82.812 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0074 K13025 - gmx:100800020 698.353