Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0071 ATGGACAAAGTGATATCAAACTGGACAATGGAATTTCTCATTCAAAGCTTCGTTCCCGATTCACTCATTCAAAAAACCCTAACCGTTCTTCCAAATTCCACCGCCGATTCTCGCCTCAAAATAGCACTCCTCCTCCGCACCCTCCAAACCACCCTCCTCAACGCTTCCCTCTCCGAAACCTCCCTCGAAATCCTCGAACACCTCGAAAACCTTTACCACAACGACGCCATTCCAATCTTCGATGCAATGCGCAGTGCTTACTGCGCTGTTGCGGTTGAAAGCACCGTCAAGTATCTCGTTGCTTGTCCTGAAGCTCCCTCCGGTGAGTACTATTCTGCTGTCCGACGTATCTGGCATCAAAGGGTTCATAAATTGTCGGAGGAGGAGGAGGGACGGAGGAGGAGGAGGAGTGAGCTTTTGTCTGATGAGTTGGATCAGTGGAGGCAAGATGTTGAAGCTGCGCTTTGGAATGTTAGGGTTTCGGAGAGGCTTGTGGGGTTGAATACAAGGAGAGATGCGATGAATCAAATGAACAGGTTTTTGAAGGAAGCATGGGAAACAATTGGACTTTCCTATATTGATTCCATGGAGACGGTTTCTATTGGGAATGCTTTGCGCCATGAACGTGTTTGTGAAATTGCTTCGGGTAGTGTAGTGTCGAACAAGTGTGAAGGAAAGTTAGAAGGTTTGCGAAAGGAGAAAATGAACTCTGTTGGTCATGATGAGAATGAGAATGAGAATGTGAATAACAATGAGAATGAGAATGAGGAGAATGATAATGTGAATGGTGATGTGGCAACAATGCGTGAAAATCATGGGAATGAGCAATTGGAAGAGAGAGTTGGTACTTATTGTGATGCAAATCAGGAAGTGGGTGGGTGTGATTCCTCAAAGGGAGATAAAGAAATCCGGAAAGACAATCATCAACTCAAACGCAAGCACTCTGCAATTCAAACATACCATACAGGAGTTAGAATCTCTGATGCTGAAGAAGCGTCTGAGGAAGCGAAAAAAACAAATTTGTCATTTAAATTTGAAAACTTGCCGAGTGCTGAAGTAGAGAAAGTTTGGGAATCCCTTAGATCAAGTTCTATAGAGGTAAAAGCAATGGTCAAGGATCCTCTTCCTGATGCATTGCATGCATCTGAAATTGTAAGATCCAAATTGGCTGCAAAAGATATAAATCGCAGGCCACCCGTTGAAAACCAGAGTGGACATGTAGATGCACCAGATTCAACTGAATGCAAGACTATTGTACTTTATCAGCCTAATGACATCAATCTTGGGAAGAAGTCTTCTGTTCATTGTAGTAGTAGTAGTCGTCGTCTTCTCCCCAAGCTAATGGAACGAGGAAGTTCTGCTCATACTTTTGAGTGGGATGATTCAATAGAGAATAAACCGCACGTAAAACAGCCAAAAAAGAAGAAAAGGAGATGGACTTCATTGGAAGAGGATACACTAAGGGATGGTGTAAAAATGTTTGGAGAAGGAAACTGGAGAGATATCCGAGAATTTTACAGAAAAATATTCGAATTTAGAAGTGCTGGTGATCTGAAGGACAAGTGGAGAAATTTGATTCGGTGA 1584 0.4306 MDKVISNWTMEFLIQSFVPDSLIQKTLTVLPNSTADSRLKIALLLRTLQTTLLNASLSETSLEILEHLENLYHNDAIPIFDAMRSAYCAVAVESTVKYLVACPEAPSGEYYSAVRRIWHQRVHKLSEEEEGRRRRRSELLSDELDQWRQDVEAALWNVRVSERLVGLNTRRDAMNQMNRFLKEAWETIGLSYIDSMETVSIGNALRHERVCEIASGSVVSNKCEGKLEGLRKEKMNSVGHDENENENVNNNENENEENDNVNGDVATMRENHGNEQLEERVGTYCDANQEVGGCDSSKGDKEIRKDNHQLKRKHSAIQTYHTGVRISDAEEASEEAKKTNLSFKFENLPSAEVEKVWESLRSSSIEVKAMVKDPLPDALHASEIVRSKLAAKDINRRPPVENQSGHVDAPDSTECKTIVLYQPNDINLGKKSSVHCSSSSRRLLPKLMERGSSAHTFEWDDSIENKPHVKQPKKKKRRWTSLEEDTLRDGVKMFGEGNWRDIREFYRKIFEFRSAGDLKDKWRNLIR* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0071 527 Pfam Myb-like DNA-binding domain 476 525 IPR001005 -
Tpr1g0071 527 MobiDBLite consensus disorder prediction 234 259 - -
Tpr1g0071 527 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 471 527 IPR017930 -
Tpr1g0071 527 PANTHER MYB TRANSCRIPTION FACTOR 1 527 - -
Tpr1g0071 527 SUPERFAMILY Homeodomain-like 473 526 IPR009057 -
Tpr1g0071 527 Coils Coil 251 271 - -
Tpr1g0071 527 Gene3D - 479 527 - -
Tpr1g0071 527 CDD SANT_TRF 477 527 - -
Tpr1g0071 527 PANTHER MYB TRANSCRIPTION FACTOR 1 527 - -
Tpr1g0071 527 SMART sant 475 527 IPR001005 -
Tpr1g0071 527 ProSiteProfiles Myb-like domain profile. 471 526 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0071 Tpr-Chr1 668274 672258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0071 419 526 Single Myb Histone (SMH) Gene Family AT1G15720 35.185 2.72e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr1g0071 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0071 - K11111 aprc:113849788 469.544