Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0061 ATGGCATCAACATCGTGTGTTACTAAGAGTCCGTTACCCATGAAAGAGACAGCTTTGAGCCATGGAGAATATCCTCCTCCTATGGCAACATATGAAGAGGTTGTAGATAATCCAAAGCTCTTCATGCTTAGCTTGGAGAAGCTCCATGCTCTAATGTGCACCAAGTTCATGATTCCCATTATTGGTGGAAGGGAATTGGATTTACATCGCCTCTTTGTTGAAGTGACTTCTCGTGGCGGGATTGAGAAGATCATTAAAGATAGAAAATGGAAAGAAATAACTTTAGTTTTCAATTTTCCATCAACGGCTACTAATGCTTCTTTTGTGCTGCGGAAGTACTATACTTCATTACTCTACCATTATGAACAAATCTATTATTTTAAAGCTCGTAACTGGACACATCCAACTTCCGATGTTTTGCAGAGTCAATCATCCATCCCAATTCCTGCTCCAAAGATGCAGATTTTGCATCCTTCACCCCAAATTCAACCAGCCGTCTTTCAACAGTTAAATGTCAATGCTGCTAGGCTGCCTCAAGCAATGGCGTCATCTTCGGCAGGGTCTTCAGTTGTTGGGGTCATTGATGGGAAATTTGATAGTGGTTATCTGGTTACTGTCACAGTCGGCTCGGAGAAACTCAAAGGCGTACTTTATCAAGCACCACAAAATGCCGTGTTGCCAACATCCCACCACAGTGCTTCTGCTAATAACAACAACGTGACTGCCTCGGTTGGTGTCCATCGTCGCCGACGCAGGAAGAAGTCAGAAATGAAAAAGAGAGATCCTGCTCACCCAAAGCCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAGCATGCAAGGCTAAAACCTCTTAACCAAGGGAGGGACAGAGAGATCAGTAGGACCATTGGTGAACTCTGGAACAAGTTAAACGACTCTGAAAAAGCAGTTTATCAAGATAAAGCTGTGAAGGACAAGGAGAGGTACAGAACAGAGATGGAGTATTACCGGGAGAAGTTGAAGATGGATCAGGTCATCAGTGATGCTGTGCCACTTCAACAGAGACTTCCTGAACCAGATACGGACATGCTGAATGCTGAGGCGGATTCTCTTCAAACCCCGGAGGAGAGCAGTTCGGGCGGAAGTGATGACTATGAAGATGACAAGGCAATGGAGAAAGATTACAGTATGGATGCATTACCTGTTATAGGAGTTGGAACTGAATGCATGGATTCAGTAGGGAAATCATCCAAGGGGGTTTTATGA 1251 0.4388 MASTSCVTKSPLPMKETALSHGEYPPPMATYEEVVDNPKLFMLSLEKLHALMCTKFMIPIIGGRELDLHRLFVEVTSRGGIEKIIKDRKWKEITLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKARNWTHPTSDVLQSQSSIPIPAPKMQILHPSPQIQPAVFQQLNVNAARLPQAMASSSAGSSVVGVIDGKFDSGYLVTVTVGSEKLKGVLYQAPQNAVLPTSHHSASANNNNVTASVGVHRRRRRKKSEMKKRDPAHPKPNRSGYNFFFAEQHARLKPLNQGRDREISRTIGELWNKLNDSEKAVYQDKAVKDKERYRTEMEYYREKLKMDQVISDAVPLQQRLPEPDTDMLNAEADSLQTPEESSSGGSDDYEDDKAMEKDYSMDALPVIGVGTECMDSVGKSSKGVL* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0061 416 Gene3D High mobility group box domain 249 344 IPR036910 -
Tpr1g0061 416 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Tpr1g0061 416 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 392 - -
Tpr1g0061 416 MobiDBLite consensus disorder prediction 243 272 - -
Tpr1g0061 416 SMART ARID_2 32 122 - -
Tpr1g0061 416 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Tpr1g0061 416 SMART hmgende2 264 333 IPR009071 -
Tpr1g0061 416 SUPERFAMILY ARID-like 34 132 IPR036431 GO:0003677
Tpr1g0061 416 MobiDBLite consensus disorder prediction 361 388 - -
Tpr1g0061 416 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Tpr1g0061 416 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Tpr1g0061 416 SMART bright_3 36 127 IPR001606 GO:0003677
Tpr1g0061 416 CDD HMGB-UBF_HMG-box 265 329 - -
Tpr1g0061 416 Gene3D - 29 137 IPR036431 GO:0003677
Tpr1g0061 416 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 392 - -
Tpr1g0061 416 SUPERFAMILY HMG-box 253 336 IPR036910 -
Tpr1g0061 416 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Tpr1g0061 416 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0061 Tpr-Chr1 601107 606464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0061 1 364 ARID Transcription Factor Family AT1G04880 60.267 6.47e-138 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tpr1g0061 ARID 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0061 - - gmx:100807028 582.408