Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0060 ATGCCTCAGCTTCGTAGTGGAGTCCGGCGTCGTCGTGCTGCTACGCCTTTAACAACCAATAAACAATCTGAACCACCGCCACCTAAGAAAAACGTTGCAGCCAGAGGTAGACCCAGAACTAGATTGGCTGCCAAGAAAAAATCCGAGTCTTTGATTGAGTTATTGGAACCTGAGACTTACGTTGAACCTCCTAAAGAGAACGTTGTTGTTGTTGTTGAAGAAGAAGAAGAAGAAGAAGGTGTTGGTGTTATGGGTGATGAAAGAGTTGGTGTTAGTGGTAATAAGGATAAAGGTGTTGCTGGTGTTCCTGAAGAGGATGCCAACTCTCCACCTCTTCCAGAAAGGGTTCAAGTAGGAGGATCGCCTCTCTACAAGGTAGAAAGGAAACTTGGTAAAGGTGGATTTGGTCAGGTTTTTGTTGGCCGTCGTGAGCGTGCAAATGCTCCCGGAGCTATGGAGGTTGCTCTGAAATTTGAACATAGAAACAGTAAAGGTTGCAACTATGGCCCTCCTTATGAGTGGCAAGTATACAACACCCTTGGTGGTAGTCATGGAATACCTAAAGTACACTATAAAGGAAGACAAGGAGATTATTATGTGATGGTTATGGACATTCTTGGTCCAAGTTTGTGGGATGTATGGAATACCTCAGGCCAGTCGATGTCTCCTGAAATGGTCTCATGTATAGCTGTTGAGTCGTTATCGATACTTGAGAAGTTGCACGCTAAAGGTTATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAACCCAGCACAGCACAAGAGAAGAAGTTGTTTCTTGTTGACCTTGGTTTAGCAACAAAGTGGAAAGATTCCTCAAGTGGAAAGCATACTGAATACGATCAACGCCCTGACATGTTTAGAGGGACTGTTCGATATGCTAGCGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCACTTGCATACACACTAATCTTCCTTCACAGGGGCCGATTGCCATGGCAAGGTTTTCAGGGTGATGGCAAATCCTTCCTCGTTTGCAAAAAGAAAATGGGAACATCTCCTGAGATGCTATGCTGCTTTTGCCCCGCACCTTTTAAGCTATTTCTCGAGACTGTGGTGAACATGAAGTTTGATGAAGAACCTAACTACTCTAAGCTAATATCCTTGTTTGATGGTATGCTAGGACCTAATCCTGCACTGCGACCAATTAATACTGAAGGTGCTCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAACGTTGATGCAGATGATGAACAGCCCAAAAAGAAGGTTCGTTCAGGGATTCCTGCTTCACAATGGATTTCAGTTTACAATGCGAGACAACCAATGAAACAAAGGTATCATTACAATGTGGCTGATGCAAGATTAGCACAGCATATTGAGAGAGGGATTGCAGATGACCTTCTTATTAGTTGTGTATCATGTTGTTCCAATCTATGGGCTCTTATCATGGATGCTGGAACTAATTATACAGCTCAAGTTTACAAATTATCACCATTATTTTTACACAAGGAATGGATCTTGGAACAATGGGATAAGAACTTCTACATTACTTCTATTGCAGGAGCTGGCAATGGCAGCTCTGTTGTGGTGATGTCAAAAGGTACGCGGTACACTCAACAATCATACAAAGTAAGCGAATCTTTTCCCTACAAATGGATAAACAAGAAGTGGAAAGAAGGTTTTCATGTCACCTCAATGGGTACTGCTGGAAATCGCTGGGGTATAGTCATGTCCCGCAATGCTGGATTCAGTGATCAGGTGGTGGAACTCGATTTTCTCTATCCAAGTGAAGGCATCCATAAACGTTGGGATAATGGCTATAGGATTACAGCAACTGCAGCTACATTGGATCAATCTGCGCTTATATTAAGCATCCCAAGGAACAGACCTGGAGATGAAACACAGGAAACTCTGCGTACATCTCAATTTCCCAGCGCTCATGTTAAGGAAAAATGGTCGAAAAACCTTTACCTTGCCCATTTGTGCTATGGACGCACAGTTTGCTGA 2043 0.4317 MPQLRSGVRRRRAATPLTTNKQSEPPPPKKNVAARGRPRTRLAAKKKSESLIELLEPETYVEPPKENVVVVVEEEEEEEGVGVMGDERVGVSGNKDKGVAGVPEEDANSPPLPERVQVGGSPLYKVERKLGKGGFGQVFVGRRERANAPGAMEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGDYYVMVMDILGPSLWDVWNTSGQSMSPEMVSCIAVESLSILEKLHAKGYVHGDVKPENFLLGQPSTAQEKKLFLVDLGLATKWKDSSSGKHTEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGFQGDGKSFLVCKKKMGTSPEMLCCFCPAPFKLFLETVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNVDADDEQPKKKVRSGIPASQWISVYNARQPMKQRYHYNVADARLAQHIERGIADDLLISCVSCCSNLWALIMDAGTNYTAQVYKLSPLFLHKEWILEQWDKNFYITSIAGAGNGSSVVVMSKGTRYTQQSYKVSESFPYKWINKKWKEGFHVTSMGTAGNRWGIVMSRNAGFSDQVVELDFLYPSEGIHKRWDNGYRITATAATLDQSALILSIPRNRPGDETQETLRTSQFPSAHVKEKWSKNLYLAHLCYGRTVC* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0060 680 SMART serkin_6 124 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0060 680 SUPERFAMILY Protein kinase-like (PK-like) 124 402 IPR011009 -
Tpr1g0060 680 ProSitePatterns Protein kinases ATP-binding region signature. 130 157 IPR017441 GO:0005524
Tpr1g0060 680 CDD STKc_CK1 124 394 - -
Tpr1g0060 680 ProSiteProfiles Protein kinase domain profile. 124 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0060 680 Gene3D Transferase(Phosphotransferase) domain 1 102 439 - -
Tpr1g0060 680 PANTHER CASEIN KINASE-RELATED 73 654 - -
Tpr1g0060 680 Pfam Protein kinase domain 124 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0060 680 MobiDBLite consensus disorder prediction 1 49 - -
Tpr1g0060 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Tpr1g0060 680 PANTHER CASEIN KINASE I-LIKE PROTEIN 73 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0060 Tpr-Chr1 591758 596970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0060 123 277 EF-hand Containing Proteins AT4G21940 27.848 1.65e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Tpr1g0060 Pkinase 1.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0060 - - gmx:100819969 1114.37