Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0055 ATGGTATCGGCTACATTTAGGCGAATTGTGTCACCCTGTTGGAGGCCATCTATTGTGGGCGAAAATTCTAGTAGATATGGCGATGCAAGTGGACGTTCCGATGGTTTGTTGTGGTATAAAGATTCCGGAAGACACGCGAATGGTGAATTCTCAATGGCTGTTGTTCAAGCAAACAATTTGTTGGAGGATCATAGTCAAATTGAATCAGGACCCATGAGCTTGATTGAAGGAAGTCCTCGAGGTACTTTTGTTGGTGTATATGATGGCCATGGAGGTCCAGAAACAGCCCGGTTTGTCAATGAACGCCTATTTAAACATATCAAGAAGTTCACTTCAGAAAACCAGGGAATGTCAGCAGATGTTATCACGAAAGCATTTTTGGCAACAGAAGAAGAATTTCTTGCTGTGGTAAAGAAGCAATGGCAACACAAACCACAGCTAGCGTCGGTTGGATCTTGCTGTTTGGTAGGCGTAATATATAACGGAGAGCTCTATACTGCAAATGCAGGAGACTCTCGAGCAGTGTTAGGCAGACTGGATGAGGCTACAAAAGAGATTAAAGCGGTTCAACTATCATATGAGCACAATGCTAGCCGAGAATCTGTCAGAGAGGAGCTACGCTCATTGCATCCTGATGATCCACAGATCGTACTGATGAAGCACACGGTCTGGCGCGTGAAGGGTCTCATTCAGATTTCAAGATCCATTGGCGACGCTTATCTAAAGAGAAAAGAATTTAACCAAGCACCACTGTTGGCAAAGTTTCGGCTGGCAGAACCCTTTGAGAAGCCCATCCTTAAAGCCGAACCAACAGTACAAGTACAGAAACTACAACCTAGTGATCAATTTGTTATATTTGCATCAGATGGATTATGGGAGCATTTGAGCAATCAAGAAGTCGTTGACATTGTCCAAAGCAGTCCACGCAATGGAGTAGCGAAGAAACTGATAAAAACAGCACTTTGTGAAGCTGCAAAGAAAAGAGAAATGAGATACTCGGACTTGAAAAAGATTGATCGTGGAATACGGAGACATTTCCATGATGACATCACGGTTATAGTTTTGTATCTGGATTCATATAATCCACGTGCTCCCGTCGTTTCAATTAAAGGAGGTGGTGATTTTGGTATCGGTATTGTAAATGGCTAG 1149 0.4308 MVSATFRRIVSPCWRPSIVGENSSRYGDASGRSDGLLWYKDSGRHANGEFSMAVVQANNLLEDHSQIESGPMSLIEGSPRGTFVGVYDGHGGPETARFVNERLFKHIKKFTSENQGMSADVITKAFLATEEEFLAVVKKQWQHKPQLASVGSCCLVGVIYNGELYTANAGDSRAVLGRLDEATKEIKAVQLSYEHNASRESVREELRSLHPDDPQIVLMKHTVWRVKGLIQISRSIGDAYLKRKEFNQAPLLAKFRLAEPFEKPILKAEPTVQVQKLQPSDQFVIFASDGLWEHLSNQEVVDIVQSSPRNGVAKKLIKTALCEAAKKREMRYSDLKKIDRGIRRHFHDDITVIVLYLDSYNPRAPVVSIKGGGDFGIGIVNG* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0055 382 ProSiteProfiles PPM-type phosphatase domain profile. 49 357 IPR001932 -
Tpr1g0055 382 PANTHER ALPHABET, ISOFORM E-RELATED 8 374 - -
Tpr1g0055 382 Gene3D - 38 362 IPR036457 -
Tpr1g0055 382 SMART PP2C_4 41 355 IPR001932 -
Tpr1g0055 382 Pfam Protein phosphatase 2C 76 327 IPR001932 -
Tpr1g0055 382 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Tpr1g0055 382 SUPERFAMILY PP2C-like 61 359 IPR036457 -
Tpr1g0055 382 CDD PP2Cc 50 357 IPR001932 -
Tpr1g0055 382 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 8 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0055 Tpr-Chr1 554004 556993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0055 3 376 PP2C-type Phosphatase Gene Family AT3G12620 72.368 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0055 K01102 - gmx:100807559 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0055 1 554004 556993 Tpr1g0055 1 554004 556993 ECH