Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0042 ATGCGTCGTTGGCTATGCTGCACTTGTCAGGTGGAGGAGTCTTATCCATCAAATGAAAATGAACACCTGAAAAGCCCAAGGAGTTTTGGAGAAGGCAACCAAAAAGGCTCAAGGGGGTCAGCTCCTGCCAAACCTGAAACACAAAAGGCACCACCACCTATCGAAGTTCCAGCATTATCCTTAGATGAGCTGAAGGAGAAAACTGACAACTTTGGGTCAAAGGCATTGATTGGTGAAGGGTCGTATGGGAGAGTGTATTATGCAACATTAAACAATGGAAAAGCTGTGGCTGTGAAAAAGCTTGATGTTTCTTCTGAACCCGAATCAAATAACGAGTTTCTTACCCAGGTTTCCATGGTCTCAAGATTGAAGAATGACAATTTTGTTGAGTTGCATGGATACTGTGTTGAAGGAAATCTTCGTGTACTTGCATATGAGTTTGCTACTATGGGCTCTCTTCATGACATTTTGCACGGTAGAAAGGGAGTTCAAGGGGCACAACCAGGGCCAACTCTTAACTGGATGCAGAGAGTTAGAATTGCAGTTGATGCAGCAAGGGGATTAGAGTATTTACATGAGAAAGTTCAACCATCAATTATACACAGGGATATCAGGTCAAGCAATGTGCTTATCTTTGAAGATTACAGAGCTAAGATAGCTGATTTTAACCTCTCTAATCAGGCCCCTGACATGGCTGCACGTCTTCATTCTACCCGTGTATTGGGAACCTTTGGGTATCATGCTCCAGAATATGCCATGACTGGTCAGTTAACTCAAAAAAGTGATGTCTACAGTTTTGGCGTTGTTCTTCTTGAACTTCTTACAGGTAGGAAACCCGTTGATCATACCATGCCTCGAGGACAGCAAAGTCTTGTCACATGGGCTACCCCAAGATTAAGTGAAGATAAAGTGAAACAATGTGTGGACCCAAAACTGAAAGGAGAATATCCCCCAAAAGGAGTTGCTAAGCTCGCAGCTGTAGCAGCACTGTGTGTGCAATATGAAGCTGAGTTTAGGCCTAATATGAGCATTGTTGTTAAAGCACTCCAACCACTTTTGAAGGCTCCCGCACCTGCACCAGAAACTTGA 1089 0.4362 MRRWLCCTCQVEESYPSNENEHLKSPRSFGEGNQKGSRGSAPAKPETQKAPPPIEVPALSLDELKEKTDNFGSKALIGEGSYGRVYYATLNNGKAVAVKKLDVSSEPESNNEFLTQVSMVSRLKNDNFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLNWMQRVRIAVDAARGLEYLHEKVQPSIIHRDIRSSNVLIFEDYRAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKAPAPAPET* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0042 362 SMART tyrkin_6 71 349 IPR020635 GO:0004713|GO:0006468
Tpr1g0042 362 MobiDBLite consensus disorder prediction 14 55 - -
Tpr1g0042 362 Pfam Protein tyrosine and serine/threonine kinase 76 349 IPR001245 GO:0004672|GO:0006468
Tpr1g0042 362 SUPERFAMILY Protein kinase-like (PK-like) 51 349 IPR011009 -
Tpr1g0042 362 Gene3D Transferase(Phosphotransferase) domain 1 149 357 - -
Tpr1g0042 362 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0042 362 Gene3D Phosphorylase Kinase; domain 1 44 147 - -
Tpr1g0042 362 ProSitePatterns Tyrosine protein kinases specific active-site signature. 199 211 IPR008266 GO:0004672|GO:0006468
Tpr1g0042 362 PIRSF ILK 32 357 - -
Tpr1g0042 362 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Tpr1g0042 362 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 1 361 - -
Tpr1g0042 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0042 Tpr-Chr1 412060 415743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0042 5 350 Receptor kinase-like Gene Family AT4G02010 46.132 1.14e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Tpr1g0042 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0042 K13436 - gmx:100790016 665.225