Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0034 ATGGAGCTGCCATGGGAGAATAATTGGCCTCTTCATACGGAAATAGCACAACAATCATCTTTAGTAGGCGGAGCTGCCGCCACCAATGAGTTGTCGCCGCCACCGTTGCCGCGGGAGCTGCTTCCTCCGTCCTCTAGTAATTGCATGACACTCCCATTTATACCAGCTGCCGCTATGTCCAAACCACCAATTTGTTATAGAAAAAAGAGAAGTTCTGAGAATCTAAATAGCTTAAAAGCAAAAAGAGAAAAGAAGATTATAAGAAGTGGATCTGAGATTGAACATCACACAATGTTAGAGAGGAAAAGGAGACGTAGACTTGCTCACCAATTCATAGAGCTTTCAGCTACTATTCCTGGCTTAAAGAAGATAGACAAAATTTCTATAATTATAGGAGCTATCAATCACGTGGAACAACTTCAAAAACGAGTGATGGAGTTAGAACATGAAAACAAGAGAGGCAAAGAACCTAATATACTCCTCAATATGGCAAGTGATCCAAATCTTGACAATTGTCTTGGACCCGATGAATTATTGCTTCCTCATGTCAAAGCAAAAGTGATGGAAAATAATATACTCATTTACATCAATTGTGAGAAGGAAAATGGCATTGTACTCAAAATATTAAACAAGCTTGGAAATCTTCATTTGTTAGTGACAAGCACCACCGTATTGCCGTTTGGTAATTCAACTCTTCGCATTACTATCATTGCCGAGATGGGTGATGCATACAAAATGAAGATGATGGATCTAGGGGATAACGTAAGGCAATTGCTGTCAAATGATGGTTCTACAAATCGTTGA 804 0.3955 MELPWENNWPLHTEIAQQSSLVGGAAATNELSPPPLPRELLPPSSSNCMTLPFIPAAAMSKPPICYRKKRSSENLNSLKAKREKKIIRSGSEIEHHTMLERKRRRRLAHQFIELSATIPGLKKIDKISIIIGAINHVEQLQKRVMELEHENKRGKEPNILLNMASDPNLDNCLGPDELLLPHVKAKVMENNILIYINCEKENGIVLKILNKLGNLHLLVTSTTVLPFGNSTLRITIIAEMGDAYKMKMMDLGDNVRQLLSNDGSTNR* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0034 267 Gene3D - 87 158 IPR036638 GO:0046983
Tpr1g0034 267 Coils Coil 130 150 - -
Tpr1g0034 267 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 53 262 - -
Tpr1g0034 267 Pfam Helix-loop-helix DNA-binding domain 95 141 IPR011598 GO:0046983
Tpr1g0034 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 140 IPR011598 GO:0046983
Tpr1g0034 267 PANTHER BHLH TRANSCRIPTION FACTOR 53 262 - -
Tpr1g0034 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 161 IPR036638 GO:0046983
Tpr1g0034 267 SMART finulus 97 146 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0034 Tpr-Chr1 309665 312992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0034 70 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.313 2.49e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g0034 HLH 8.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0034 - - mtr:MTR_2g104530 253.832