Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0025 ATGTCTCGCAACAACGACGAAAGAGAAGAAGAAGCGTTTCGTCGCGTGAAGATAGAACGCCTCAATGCCAATGATAACGCACCGGAAGACCACCAAGATTCTTCCAGCCGCAGAATCATCCGCTCCGAGTTTCTCAAACTCAAGTCTCTCATCAACGAGAAAAAGGATGATTTGATGAACACTGATTCTGACAAGTTCGATTCAATCCTTCATGAGTTTGACAAATTACATGACAAAGTCAAAAGACCTCGAGAGCAGGTTGCTGACGCTGAAGCACTTCTCGATCTAACACACAATTTGCTTGGATCCGTTAAATCTCTTGTCAACGAAGGTGTTACTCCTTCTCAGTTTGTTTCATCTCTTCTCAAACATTATGCTCACCCACCCAACACTTCAATTCACTGGCAAAAACTTGGCATTGCTGTTTCCCCTATTTTCCTCACGGTTCATGCTCCATCTACCATGCTCGGCCCCATGGAAAACCAGTTGAAACAGCGCAAAGCGATCATGCCTAGAAAGCGAGCTCCCCGTGCAACTACAACTGCTAGGCCTGAACAGCTGGATGATGCTGTTGGAGGCGAGAAAACTGATACTGACAAAAACATGTCTATCATGTTTAACATATTAAGGGAAAAGAAAAGGGTCCAACTTGAACACCTGATTTTGAACAGATTTTCATTTGCTCAGACAGTGGAAAACTTGTTTGCCCTCTCATTTTTAGTGAAAGATGGCCGTGCTGAGATCATTATGGATAAAAACCGTGTGCACTATGTTGCACCCAAAAATGCTCCGGCTGCCAACTCTGTAATGTCAAAAGAAGTTTCTTACACTCATTTTGTCTTCAGATATGATTTCAATGACTGGAAGATAATGAAGGATGTTGTGGCTGAGGGTGAAGAGTTAATGCCACATAGGATTCAATACAGCAACATGGTTAACTCACCGGCAGAAACAAGCGGTGACAATTCACAACAAGCTGCAGCTGTGACTCCGATTAGAAAGATATCCAGAAATCGGGGGCGGGTTCTGCAGGAAGAAGTTGTTGTGGAAGAATCGCCCGAGTGCAGTGATGAACACTTTTCTAGAGCTGCTGCAATACGAAGGTGTAAGCGTAAACTTCCTTAA 1125 0.4382 MSRNNDEREEEAFRRVKIERLNANDNAPEDHQDSSSRRIIRSEFLKLKSLINEKKDDLMNTDSDKFDSILHEFDKLHDKVKRPREQVADAEALLDLTHNLLGSVKSLVNEGVTPSQFVSSLLKHYAHPPNTSIHWQKLGIAVSPIFLTVHAPSTMLGPMENQLKQRKAIMPRKRAPRATTTARPEQLDDAVGGEKTDTDKNMSIMFNILREKKRVQLEHLILNRFSFAQTVENLFALSFLVKDGRAEIIMDKNRVHYVAPKNAPAANSVMSKEVSYTHFVFRYDFNDWKIMKDVVAEGEELMPHRIQYSNMVNSPAETSGDNSQQAAAVTPIRKISRNRGRVLQEEVVVEESPECSDEHFSRAAAIRRCKRKLP* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0025 374 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 6 352 - -
Tpr1g0025 374 Pfam Nse4 C-terminal 215 301 IPR014854 -
Tpr1g0025 374 PANTHER UNCHARACTERIZED 6 352 IPR027786 GO:0005634|GO:0006281|GO:0030915
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0025 Tpr-Chr1 243181 245601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0025 35 373 Non-SMC Element family AT1G51130 52.000 3.45e-119 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0025 K22825 - gmx:100792117 472.241