Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0024 ATGGCCGGGAGCTATGAAATGTCATGTTCAACTGAAATAAACAAATTGGCAAAACGTGCGAGGTATGAAGCAGAAGGGTCTCAAAAGTTCAAAGGTATTGTTCCTCAACAAAACGGACATTGGGGTGCACAAATATACGCAAACCATCAAAGAATATGGTTAGGGACATTCAAATCCGAAAGAGATGCTGCCATGGCTTACGACAGCGCCACCATTAAGCTTAGAAGTGGAGAAAGCAATAGGAATTTTCCATGGAATGACCAAACAGTTCAAGAACCTTTTTTTCAAAGTCATTATAGCATGGAAACAATTTTGAGCATGATTAGAAATGGAACCTACCAATCTAAATTTGCCACGTTTCTTAGGAACCAAAGCCAAAGTGGCATTGTTGGGTTGAAGAAGAAGAAGGGTGGTGGGGAACAATTTTCTTGCACACAACTTTTTCAGAAAGAATTAACACCTAGTGATGTTGGTAAACTAAATAGGCTTGTCATCCCCAAAAAACATGCAGTTACTTATTTTCCTTTGGTTTATGACAACAATATAACTGCAAACGAGAACGAGGATCATAAGTGCAGCAGCGATGTGGAGGTTGTGTTTTATGACAAACTAATGCGATTGTGGAGGTTTCGATACTGTTATTGGAAGAGCAGCCAAAGCTATGTGTTCACTAGAGGATGGAATCGATTTGTCAAGGATAAGAAATTAAAGGCTAAAGACACCATTGTGTTTTATACGTGTGAACCTATAATAAATTTCAAAAAATGTGGTGATCATCATGAACAACTCTTTTCATTGATTGATGTAATATATCATAGAAAAAAGGGAGAAGATGCCAAACATGTTTTGGAAAAAAGGATAATAATTTCCAATGAAGTGGATGATGAAGAGACTCAAGGTAGAATAGATTTGAATGCATTTCATTCCACACATAATAATTCAGATACAAGATTTAAGCTCTTTGGCGTAAGTATCAGCTGA 981 0.371 MAGSYEMSCSTEINKLAKRARYEAEGSQKFKGIVPQQNGHWGAQIYANHQRIWLGTFKSERDAAMAYDSATIKLRSGESNRNFPWNDQTVQEPFFQSHYSMETILSMIRNGTYQSKFATFLRNQSQSGIVGLKKKKGGGEQFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPLVYDNNITANENEDHKCSSDVEVVFYDKLMRLWRFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIVFYTCEPIINFKKCGDHHEQLFSLIDVIYHRKKGEDAKHVLEKRIIISNEVDDEETQGRIDLNAFHSTHNNSDTRFKLFGVSIS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0024 326 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Tpr1g0024 326 SUPERFAMILY DNA-binding pseudobarrel domain 146 247 IPR015300 -
Tpr1g0024 326 Pfam B3 DNA binding domain 148 245 IPR003340 GO:0003677
Tpr1g0024 326 SMART B3_2 148 259 IPR003340 GO:0003677
Tpr1g0024 326 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 9 288 - -
Tpr1g0024 326 CDD B3_DNA 147 245 IPR003340 GO:0003677
Tpr1g0024 326 ProSiteProfiles B3 DNA-binding domain profile. 148 257 IPR003340 GO:0003677
Tpr1g0024 326 ProSiteProfiles AP2/ERF domain profile. 29 84 IPR001471 GO:0003700|GO:0006355
Tpr1g0024 326 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 9 288 IPR044800 GO:0003700
Tpr1g0024 326 CDD AP2 28 86 IPR001471 GO:0003700|GO:0006355
Tpr1g0024 326 Gene3D - 143 264 IPR015300 -
Tpr1g0024 326 SMART rav1_2 29 90 IPR001471 GO:0003700|GO:0006355
Tpr1g0024 326 Gene3D AP2/ERF domain 28 85 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0024 Tpr-Chr1 239387 240367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0024 11 325 RAV Transcription Factor Family AT1G51120 52.568 3.67e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g0024 B3 2e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0024 K09287 - gmx:102660503 359.377