Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0019 ATGTATCGTCCTCCTTCGTCTTCCGGTTCTTCTTCATCCTCTTCCTCTCAGCAACAGCAGAGCTCCATCAGCCAACAAACGGGACTTACCAGGTACGATTCCGCACCCGGTTCTCTCCTCGCCAGCACCGTTGATGCCATCATAGGAGGAGGATCGAGACTTCTCCCTGGAACGGGAGGAGGAGGAGGAGGAGGACATCATTATTTCTCCGGTGACTCCAACCAACAACATCAACAACAACAGCAGCAGCATCAGCTACAGAGATCTTCTAATGGTTACGTCGACGGCTTTGATGGATCGGCAGCGTTGCTCCGTCAAAAAAGCTCTCCAGCTGGCTTCCTAAACCATCTAGCCACTCTCAATCATAATAATAGTGCGGGGTTCACAATCACAAGGGGGGGAAATGGAGGCTCAAGGTTGAAGTCTGAGTTGAGTTTCACAGGAGGAGGCGGCAGCGGAGGAGGACAAGAATGCCTTTCTCGAATATCCGAAAATGTTGTTGACTATGCAACAGCATCAGGAAATGGATCATTGCACAATACTAGTACCTGGGGTGGACCTGATAATAACAATAACAATAATTCTAATTCCATAGTATTTTCTTCTTCTGCTCCCCAAACTAACAATACTAATAAGCGTTCTAGTAGAACTGACAACGACGACCCCGATCTTCTTCTACATTGCCTCACTGCCCTCGAAACTCAGTATAGTCTCCCACAAACTTCTTTGGAAATGGACAAGCTTATGCATAATATTCCCCAAGATTCCGTCCCTTGTAAAATCCGTGCCAAGCGTGGCTGTGCCACTCATCCTCGTAGCATTGCTGAACGGGAGAGGAGAACTAGAATAAGTGGCAAGTTGAAGAAATTGCAGGACCTTGTTCCTAATATGGATAAGCAAACAAGTTATTCTGACATGCTGGATTTGGCCGTTCAACACATCAAAGGTCTTCAAACTCAAGTTCAGAAGCTTCACGAAGATCTTGAGAATTGCACTTGCGGATGCAAACAAAGTACATAA 1020 0.4637 MYRPPSSSGSSSSSSSQQQQSSISQQTGLTRYDSAPGSLLASTVDAIIGGGSRLLPGTGGGGGGGHHYFSGDSNQQHQQQQQQHQLQRSSNGYVDGFDGSAALLRQKSSPAGFLNHLATLNHNNSAGFTITRGGNGGSRLKSELSFTGGGGSGGGQECLSRISENVVDYATASGNGSLHNTSTWGGPDNNNNNNSNSIVFSSSAPQTNNTNKRSSRTDNDDPDLLLHCLTALETQYSLPQTSLEMDKLMHNIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLENCTCGCKQST* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0019 339 Gene3D - 268 337 IPR036638 GO:0046983
Tpr1g0019 339 Pfam Helix-loop-helix DNA-binding domain 272 318 IPR011598 GO:0046983
Tpr1g0019 339 MobiDBLite consensus disorder prediction 1 31 - -
Tpr1g0019 339 CDD bHLH_AtbHLH_like 272 324 IPR045239 -
Tpr1g0019 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 317 IPR011598 GO:0046983
Tpr1g0019 339 PANTHER TRANSCRIPTION FACTOR BHLH129 28 332 - -
Tpr1g0019 339 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 332 - -
Tpr1g0019 339 SMART finulus 273 323 IPR011598 GO:0046983
Tpr1g0019 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 331 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0019 Tpr-Chr1 180427 183568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0019 96 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43140 52.124 5.63e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g0019 HLH 9.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0019 - - mtr:MTR_1g116790 446.047