Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0012 ATGGACAAGTTGTGGAGCTTTTCATCAAGAACCAATAACGCTGTTGACAACGTAAGACAACAATGGGAAGAAGAAAGGGATGAACAATTAGATGATGATGATTTGATCCCTCTCTCACAGGTTTTGGAAGATGTGGATTGTTTTCTCAATAATAATAATAATAATGCTGCTACAACGACTCACAACAGTTCTAGGGAAGAACAAGTTCCAAATTGTGTGGTTGTGTTGCACAAGTTGTTGGAATCTATGATGGATAAATATAATAGATCAGCTGGGTGTAACGGATCAAGAAGAAGCAAGTTTGGAAAAAATCCAAAGAATGACAAGTCATTTCTATATATGGTGGATCGCATCTTCAAGCTCTCTACCACCACCACCACCACCTTGAATTTAGACAAAACAACATCTATCCTAGAAAGAGTTATGTTTATCTTAGAGAATGACCTTTGTGCTCTTTTAGAAGACCACATATCCAAAAATTGGAGACCAACACCACCACCACCACCCAGGAAATCCTCCTCCTTTGGTTCCCTTCAGTTTCAACTTCAAGATCATGAGAGGGAATCTCCAAAGCCCGGCAACCCAGATGATGAGGACGACGAGGATGACGGCTTATTGCCAACTTTCTCACCAGAAGACCTTTCCGTTCTAAACAAGATTGTGACTGTCATGATCAATGTGGGCTATCATACAGAGTGTTGCATGGCCTTCACAAATTACAGACGAATTGCTTTCAAAACTGTGTTGCAAAAATTGGGATACACTTGCATAAGGATGGATGAGGTTTATAAAATGCAATGGGAGTTTTTGGAAGGAGAAATTGCCACATGGAACAGAGTGTTCCGGCATTGCACTTCCGTGCTCTTCAACGCTGAAAGAAAGCTATACAATTCAGTATTTTCAAATCAACCACATATTTCTAGAGCCATATTTAGTGTTATTGCCCAAGCTGTCATCGTCAACTTTCTTAATTTTGCACAAGCGGTTGTTTTAACCAAGCCATCGCCTGAAAAACTTTTCAAATTCCTTGATATGTATGAGACCTTAAGGGATGAAGTGGAGTCTGTCATCATACTCATTCATGATGACGGTTCAGAGCAGTGTGCCAAAGATTTGGGGTCCGAACTGGCTGCAGCAAAGCATGGGATCATAGAGGCTATTGTAGCAATGTTTTATGATTTGGAAAACTCCATTAAGGGTGACAATGAAAGGATTCCAATCCCCTATGGCGCGGTTCATCCATTAACTCGTTATGTAATGAATTATCTTAAATATGCATGTGAATACAAAGCGACTTTAGAGCAAGTGTTTTCCTCCCAATATTGTATGAATCATTATCTTTATATCGATAATAATAACAATAAGGGTACATCCACTACCACCACAAAGATTCAAGAAAAAAATACATCATCAGAAGATCAAGAATTGGATGAGACGCCAAAGAAATCACCTTTTGTGGTTCAATTGATGACAATTATGGACCTTTTAGATGTAAATACAGAAAGAAAGTCCAAGCTATATAAGGATCCAGCTTTACGTTGTATTTTTCTAATGAACAATGGAAGATACATAGTACAAAAGATTAAAGGGTGTGATGATCTTCATGAGTCGATGGGCGACAATTGGTGTAGGAGGATGCAATCAAGTTTGAGGTTGCACCACAAGAGTTATCAGAGAGAGACTTGGAGCAAGGTGGTACAGTGCCTCAACCCAGATGGTTTGCAACAACAGGGGAACAAAGTGTCTAAGCAAATATTGAGAGAGAGGTTTAAGTGCTTTAATTCCATGTTTGAAGAGATCCACAAGACACAAAGTAGCTGGATCGTAAGCGATGAACAACTTCAATCAGAGTTAAGAGTTTCAATATGTTCTTTGGTCATACCTGCGTATCGCTCCTTTATGGGAAGATTCAAACATCATCTAGAATCAGGCAAACATGCTGACAAGTATATCAAGTATCATCCTGACGACCTTGAGACTTTGATTGACGATTTTTTTGTTGGAAATGCTATGTCCATGCCTCGAAGGAGAACATGA 2037 0.3927 MDKLWSFSSRTNNAVDNVRQQWEEERDEQLDDDDLIPLSQVLEDVDCFLNNNNNNAATTTHNSSREEQVPNCVVVLHKLLESMMDKYNRSAGCNGSRRSKFGKNPKNDKSFLYMVDRIFKLSTTTTTTLNLDKTTSILERVMFILENDLCALLEDHISKNWRPTPPPPPRKSSSFGSLQFQLQDHERESPKPGNPDDEDDEDDGLLPTFSPEDLSVLNKIVTVMINVGYHTECCMAFTNYRRIAFKTVLQKLGYTCIRMDEVYKMQWEFLEGEIATWNRVFRHCTSVLFNAERKLYNSVFSNQPHISRAIFSVIAQAVIVNFLNFAQAVVLTKPSPEKLFKFLDMYETLRDEVESVIILIHDDGSEQCAKDLGSELAAAKHGIIEAIVAMFYDLENSIKGDNERIPIPYGAVHPLTRYVMNYLKYACEYKATLEQVFSSQYCMNHYLYIDNNNNKGTSTTTTKIQEKNTSSEDQELDETPKKSPFVVQLMTIMDLLDVNTERKSKLYKDPALRCIFLMNNGRYIVQKIKGCDDLHESMGDNWCRRMQSSLRLHHKSYQRETWSKVVQCLNPDGLQQQGNKVSKQILRERFKCFNSMFEEIHKTQSSWIVSDEQLQSELRVSICSLVIPAYRSFMGRFKHHLESGKHADKYIKYHPDDLETLIDDFFVGNAMSMPRRRT* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0012 678 SUPERFAMILY Cullin repeat-like 102 666 IPR016159 -
Tpr1g0012 678 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 25 669 - -
Tpr1g0012 678 PANTHER EXOCYST COMPLEX PROTEIN EXO70 25 669 IPR004140 GO:0000145|GO:0006887
Tpr1g0012 678 Pfam Exo70 exocyst complex subunit 276 664 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tpr1g0012 678 Gene3D Exocyst complex component Exo70 97 676 - -
Tpr1g0012 678 MobiDBLite consensus disorder prediction 160 210 - -
Tpr1g0012 678 MobiDBLite consensus disorder prediction 459 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0012 Tpr-Chr1 133856 136271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0012 99 677 EXO70 exocyst subunit family AT5G13150 47.492 4.11e-177 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0012 K07195 - mtr:MTR_1g117090 956.051