Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0008 ATGGCGGCATTCAATGTTACAGCACCGCCACTTTTCTCACTGTCGAATGTTGCAGATAGCAGCAGAGGCATAAGAAGAATCAGAGCTCTGAACCCTAACCCTAGAAGTATCGCCGCCGGGTTTGGCCGTGAGAGAGGCGTGAAACTGCTGCCACTATTACCACTACGAAAAGAACAACAACAGAACAGTAGTATTGTTGGTGCGAGAGTGAGAGTGAGGGCTGGCAGTGGTGAAGAGGAAGTAACAGTACAGTCAAAAGTGACTCACAAAGTATACTTTGATATAAGTATTGGAAATCCAGTTGGAAAGCTGGTGGGAAGGATTGTGATTGGACTCTTTGGTGACGATGTACCCCAAACTGTTGAGAACTTCCGTGCCCTTTGCACCGGTGAGAAGGGTTTTGGCTACAAGTCCTCTGCCTTCCATCGTGTCATCAAGGATTTTATGATTCAAGGAGGCGATTTTGACAAAGGAAATGGGACCGGAGGCAAAAGTATATATGGCCGTACTTTCAAAGATGAGAATTTTAAACTGTCTCATACTGGACCAGGAGTAGTTAGCATGGCAAATGCAGGTCCCAACACTAATGGGAGTCAGTTTTTCATATGCACCGTCAAGACCCAGTGGCTGGATAAGAAACATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCACAGGAGACAGATCGTGGCGATCGTCCCCGAAAGAAGGTGCTTATCAGTGAATGTGGTGAGCTTCCAATTGCTTGA 771 0.4591 MAAFNVTAPPLFSLSNVADSSRGIRRIRALNPNPRSIAAGFGRERGVKLLPLLPLRKEQQQNSSIVGARVRVRAGSGEEEVTVQSKVTHKVYFDISIGNPVGKLVGRIVIGLFGDDVPQTVENFRALCTGEKGFGYKSSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTQWLDKKHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVLISECGELPIA* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0008 256 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 45 255 - -
Tpr1g0008 256 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 102 252 IPR002130 GO:0000413|GO:0003755
Tpr1g0008 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 127 IPR002130 GO:0000413|GO:0003755
Tpr1g0008 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 141 153 IPR002130 GO:0000413|GO:0003755
Tpr1g0008 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 184 199 IPR002130 GO:0000413|GO:0003755
Tpr1g0008 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 199 211 IPR002130 GO:0000413|GO:0003755
Tpr1g0008 256 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 212 227 IPR002130 GO:0000413|GO:0003755
Tpr1g0008 256 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 105 251 IPR002130 GO:0000413|GO:0003755
Tpr1g0008 256 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 136 153 IPR020892 GO:0003755|GO:0006457
Tpr1g0008 256 CDD cyclophilin_ABH_like 89 251 - -
Tpr1g0008 256 Gene3D - 78 256 IPR029000 -
Tpr1g0008 256 SUPERFAMILY Cyclophilin-like 84 253 IPR029000 -
Tpr1g0008 256 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 45 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0008 Tpr-Chr1 112394 114520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0008 106 250 U-box Gene Family AT5G67530 49.315 4.54e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0008 K03768 - gmx:100777088 353.214