Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc9g00031 ATGAGCAGCACCTATAGGAATCCTCCACCACCACCACCACCTCCTACGCGCTACAGGGGCACGCGCCTCCGGGGTGGCAAGTGGGTGTCGGAGATAAGGCTGCCACGTAGCAACAAACGCATTTGGCTTGGGACTTACCCGACACCTCACATGGCTGCTGCGGCTCACGATGTCGCTACTCTTGCACTCAGGGGCCCCGGAGCCCATCTCAACTTCCCCGCTTTCATACTCTCTTATCCTATTCCCGCTTCCTTCGATGATTCTGATATTCGCGCTGCCGCCGTCGTCGCCGCCTCCCTCTTCGCTCATCAGCCATCCACCATCACCACGCCACCACCACCACCACCGATTATTAATACTAGTAATGAACAGAACACACTAATAAGAGCTGCTGCTGGAGAAGAAGAAGGGATGGCGATGTTAGGGGATTATTTTGATGAGGATGAAGTTTTGAACATGCTGAGTGTGATTGAAGACATGGCTAGGGGACTGCAGATTAGGCCCCCAAGGATGCCATCTTTCGACTCCGACGAGCAAGATTATTCCGATCTCTATGCCCTTTGGTAA 567 0.5362 MSSTYRNPPPPPPPPTRYRGTRLRGGKWVSEIRLPRSNKRIWLGTYPTPHMAAAAHDVATLALRGPGAHLNFPAFILSYPIPASFDDSDIRAAAVVAASLFAHQPSTITTPPPPPPIINTSNEQNTLIRAAAGEEEGMAMLGDYFDEDEVLNMLSVIEDMARGLQIRPPRMPSFDSDEQDYSDLYALW 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc9g00031 188 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Stsc9g00031 188 MobiDBLite consensus disorder prediction 1 21 - -
Stsc9g00031 188 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Stsc9g00031 188 ProSiteProfiles AP2/ERF domain profile. 17 73 IPR001471 GO:0003700|GO:0006355
Stsc9g00031 188 SUPERFAMILY DNA-binding domain 17 74 IPR016177 GO:0003677
Stsc9g00031 188 SMART rav1_2 17 79 IPR001471 GO:0003700|GO:0006355
Stsc9g00031 188 Pfam AP2 domain 17 65 IPR001471 GO:0003700|GO:0006355
Stsc9g00031 188 MobiDBLite consensus disorder prediction 1 18 - -
Stsc9g00031 188 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 180 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc9g00031 Stsc-Chr9 201997 202563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc9g00031 18 188 AP2-EREBP Transcription Factor Family AT5G52020 42.222 1.98e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc9g00031 AP2 3.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc9g00031 - - adu:107466884 206.453