Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc9g00012 ATGGGACAGCTTCCTTCCAAGGACATTTTACCATTGCTGGAATTTAAGAAAAGCATCAAGCATGACCCTACTGGTTATGTCCTCAATTCATGGAATGAGGAATCCATTGACTTTGATGGATGTCCTTCTTCGTGGAATGGAGTGCTGTGTAATGATAGTGACATTGTCGGCATTGTTCTTGATAACCTTGGTTTATCTGCTAATGCCAACTTAAGTGTTTTCTCCACCCTCAAAAGGCTTGTAAAACTCTCCATGTCCAACAACTCAATATCAGGAAGTTTTCCTGATAAAATTGATGACTTAAAGAGCCTTGAAATTCTAGATTTATCCAATAATCTTTTCTCTTCGTCCTTACCGTTTGGAATAGGCACGTTAGCTGGATTGAGGAATCTGTCGTTGGCAGGAAACAACTTCTCTGGTCAAATTCCTGACTCTATTTCAGGAATGGCTTCAATGCAGGCTTTAGACTTGAGCCGCAATTCCTTTTCTGGGACACTGCCACCATCATTGACTAAGCTTACCAGCCTGGTGTTGCTTAATATATCCCATAATGCCTTCACTGGAAAAATTCCAAAAGGTTTTGAGTTGATATATTCTCTTGAAAAAATTGATTTGCATGGAAATAAGCTTGATGGTGATTTGGACACTGAATTTATACATTTTACAAGTGCAAGTTATGTTGATTTCAGTGACAACATGCTAGTAAGTTCAAAGTCACAGCAGCAGAAATTTCTAGTACAAATATCTGAAAGCATTGAGCATTTGAATCTAAGCCACAACAAGCTTACCGGGTCATTAGTTAGGGGAAGTGAGCAACCGCTTAGCAACAACAGATTTTCAGGATTTATTCCCACTGGCCTTCTGAAAGGAGACTCTTCGGTTTTAACTGAACTTGATTTAAGTGGCAACAATCTGTCAGGTGCAATGAGTATAATTACATCAACGACACTGCACTTTCTTAATCTCTCATCAAACGGGATCAGTGGTGAACTGCCACTGCTCACTGGAAACTGTGAAGTACTTGATTTGTCAAATAACAAATTAGAAGGAAATTTATCCAGGATGATGAAATGGGGTGATATCAAATATCTTGATCTAAGTAGGAATCACTTAACAGGACCCCTCCCCCAGGTAACACCTCAATTTTTGCGACTAAACTATCTGAATCTCTCCCATAATTCTCTTAGCAGCTTGCTTCCAAGAGTGTTTACAAAGTATCCAAAGCTCAAAGTGCTTGATGTTAGTTCTAACCATTTATATGGAGTATTTCTAGCTGATCTGCTTGCAGTTCCCACTTTGCATGAACTCCATCTTGAAGATAACATGTTATCTGGTGGCCTTAATTTATCATCCATTTCCAAAGTTCAATCTGATCTTCAGATTCTTGAGCTTTCTCATAATAAGCTTAATGGTCATTTTCCTGATGATTTTGGGTCATTAATTGGCTTGAAAGTGCTCAATATTGCAGCAAATAATTTTTCTGGTTCTGTTCCGACTACCATTGCTGACATGAAATCACTAGACTCCTTGGATATATCAGATAATTGTTTTACAGGTCCTTTACCAATTAACATGCCAGAGGGACTAAAATATTTTAATGCTTCAAACAATGATCTCTCTGGAGTTGTCCCAGAAGATCTTAGGAAGTTTCCTGGTTATTCTTTCTATCCTGGAAATGCTGGATTGCATTTTCCAAATGGTCCTTCTGGCTTAATCAATAAACCAGATGAAAGTTCCAATAGAAAGCCAATAAGCACTATAATTATAGTGTCAAGTTTGGTTTCTCTTGTCCTATTACTCCTGATTGCTGTCGTCATATACTACAAACGAGTATCAAGATCTCGACGAGGATATGTAGGTAAGGATATAAGTGAGCATGCTCAATCACATGTTGCTGGGCTGGGTTGTCCAAAAGACTTGGGTGGTGCGTCAGTTGTATCAGTCAAGGATCATGTTCCCCCTCACACAGAAAAATCTGCAAAAATGGATGAAAATATGGCATCTGTGTCTGGCCTCTCCCCATCAAAACACATACAATTTTCATCACCAGGGTCCAGTGATTCATCTACTGCCGAAAATATTGCAAGACTATATGCAAGATCACCAGATAAGTTGATAGGAGAGCTGCATTTTCTTGATGATACAATAACACTGACTCCTGAGGAGCTATCAAGGGCCCCGGCTGACGTTTTGGGGAGAAGCATTCATGGTACATCTTACAAAGCAACTCTGGTGAATGGTTTATTACTTAGAGTAAAGTGGCTGAGAGAAGGAGTCGCAAAACAAAGAAAAGCATTTGCTAAAGAGGCTAAAATATTTGCAAACATCAGGCACCCCAATGTTGTTGGGTTGAGAGGGTACTATTGGGGCCCTACACAGCACGAGAAGCTTATTATTACAGATTACATAGCTCCAGGAAGTCTTGCAAGTTTTCTACATGATCGACAAGGAAGAAAAGGTCCACCGTTGACTTGGGCACAGAGGCTCAAAGTAGCTGTTGATGTAGCCCGTGGCCTGAACTATCTCCATTTTGATCGTGCTGTTCCCCATGGCAACCTCAAAGCAACAAATGTGTTGTTAGATACAGCTGATTTGCATGCACGTGTAGCTGATTACTGCCTCCACAAAATCATGACTGAGGCTGGTGTTATTGAGCAGATTCTTGATGCCGGGTTCTTGGGTTATCGTGCACCAGAGTTGGCTGCTTCCAAGAAGCCCTTGCCCTCTTTCAAGACAGATGTTTACACCTTTGGGGTGATTCTTTTGGAACTTCTAACTGGGAGGTGTCCTGGAGATGTTATATCTGGTGAGGAGGAAGGTGTTGATCTACCAACCTGGGTGCGGTTGCGTGCAGCAAAAGGTAGAGTGTCGGAATGTTTTGATGCTGCATTGATGGGAGAAATGGGTAGTCCGAGTGTAGAAAAGGGCATTAATGAGGTCCTTGGAATAGCTATGCGTTGCCTAACATCTGTTTCTGAGAGACCAGACATCAAGTCTGTGTATGAAGATCTTTCTTCTATGTAG 3024 0.4081 MGQLPSKDILPLLEFKKSIKHDPTGYVLNSWNEESIDFDGCPSSWNGVLCNDSDIVGIVLDNLGLSANANLSVFSTLKRLVKLSMSNNSISGSFPDKIDDLKSLEILDLSNNLFSSSLPFGIGTLAGLRNLSLAGNNFSGQIPDSISGMASMQALDLSRNSFSGTLPPSLTKLTSLVLLNISHNAFTGKIPKGFELIYSLEKIDLHGNKLDGDLDTEFIHFTSASYVDFSDNMLVSSKSQQQKFLVQISESIEHLNLSHNKLTGSLVRGSEQPLSNNRFSGFIPTGLLKGDSSVLTELDLSGNNLSGAMSIITSTTLHFLNLSSNGISGELPLLTGNCEVLDLSNNKLEGNLSRMMKWGDIKYLDLSRNHLTGPLPQVTPQFLRLNYLNLSHNSLSSLLPRVFTKYPKLKVLDVSSNHLYGVFLADLLAVPTLHELHLEDNMLSGGLNLSSISKVQSDLQILELSHNKLNGHFPDDFGSLIGLKVLNIAANNFSGSVPTTIADMKSLDSLDISDNCFTGPLPINMPEGLKYFNASNNDLSGVVPEDLRKFPGYSFYPGNAGLHFPNGPSGLINKPDESSNRKPISTIIIVSSLVSLVLLLLIAVVIYYKRVSRSRRGYVGKDISEHAQSHVAGLGCPKDLGGASVVSVKDHVPPHTEKSAKMDENMASVSGLSPSKHIQFSSPGSSDSSTAENIARLYARSPDKLIGELHFLDDTITLTPEELSRAPADVLGRSIHGTSYKATLVNGLLLRVKWLREGVAKQRKAFAKEAKIFANIRHPNVVGLRGYYWGPTQHEKLIITDYIAPGSLASFLHDRQGRKGPPLTWAQRLKVAVDVARGLNYLHFDRAVPHGNLKATNVLLDTADLHARVADYCLHKIMTEAGVIEQILDAGFLGYRAPELAASKKPLPSFKTDVYTFGVILLELLTGRCPGDVISGEEEGVDLPTWVRLRAAKGRVSECFDAALMGEMGSPSVEKGINEVLGIAMRCLTSVSERPDIKSVYEDLSSM 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc9g00012 1007 SUPERFAMILY Protein kinase-like (PK-like) 729 1004 IPR011009 -
Stsc9g00012 1007 ProSiteProfiles Protein kinase domain profile. 725 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc9g00012 1007 Gene3D Phosphorylase Kinase; domain 1 716 802 - -
Stsc9g00012 1007 Gene3D Ribonuclease Inhibitor 166 271 IPR032675 -
Stsc9g00012 1007 PANTHER OS07G0626500 PROTEIN 274 1006 - -
Stsc9g00012 1007 Pfam Protein tyrosine and serine/threonine kinase 731 932 IPR001245 GO:0004672|GO:0006468
Stsc9g00012 1007 FunFam Pollen receptor-like kinase 1 803 1007 - -
Stsc9g00012 1007 ProSiteProfiles Leucine-rich repeat profile. 384 405 IPR001611 GO:0005515
Stsc9g00012 1007 FunFam Leucine-rich repeat receptor-like protein kinase 710 802 - -
Stsc9g00012 1007 Pfam Leucine rich repeat N-terminal domain 7 51 IPR013210 -
Stsc9g00012 1007 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 268 526 - -
Stsc9g00012 1007 Gene3D Ribonuclease Inhibitor 7 165 IPR032675 -
Stsc9g00012 1007 Gene3D Ribonuclease Inhibitor 272 356 IPR032675 -
Stsc9g00012 1007 Gene3D Ribonuclease Inhibitor 453 565 IPR032675 -
Stsc9g00012 1007 Gene3D Ribonuclease Inhibitor 357 452 IPR032675 -
Stsc9g00012 1007 SUPERFAMILY RNI-like 251 549 - -
Stsc9g00012 1007 Pfam Leucine rich repeat 127 185 IPR001611 GO:0005515
Stsc9g00012 1007 Pfam Leucine rich repeat 362 419 IPR001611 GO:0005515
Stsc9g00012 1007 Pfam Leucine rich repeat 459 515 IPR001611 GO:0005515
Stsc9g00012 1007 Pfam Leucine Rich repeat 314 330 IPR001611 GO:0005515
Stsc9g00012 1007 Pfam Leucine Rich repeat 293 307 IPR001611 GO:0005515
Stsc9g00012 1007 SUPERFAMILY L domain-like 12 266 - -
Stsc9g00012 1007 Gene3D Transferase(Phosphotransferase) domain 1 804 1007 - -
Stsc9g00012 1007 SMART LRR_typ_2 149 173 IPR003591 -
Stsc9g00012 1007 SMART LRR_typ_2 101 125 IPR003591 -
Stsc9g00012 1007 SMART LRR_typ_2 382 405 IPR003591 -
Stsc9g00012 1007 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 4 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc9g00012 Stsc-Chr9 81197 84635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc9g00012 74 555 Receptor kinase-like Gene Family AT5G07280 29.550 1.05e-42 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc9g00012 PK_Tyr_Ser-Thr 1.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc9g00012 - - gmx:100793639 1401.34