Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc9g00008 ATGACCTCTGCTAATGACATCACCGATAATGAAGCTGATGAGAAGCAACAGTCAGAATCAGAGATGCAGTCTTCCTCTGCTAACGGAACTTCTGATCCAGATACTGGTGCCCAGAATGTTCAGTTTGCAACGCCTGCACAGCTTGGAGCTGGGCTGGCTATGGCACCGCCGGGTTATCCATATCCAGATCCTTACTATAGAAGCATCTTTTCTCCCTACGATACACAAGCTTATGCCCCGCAGCCGTATGGTGGACAACCAATGGTCCACTTTCAGTTAATGGGAATTCAGCAAGCCGGTGTTCCTCTTCCAACTGATGCTGTTGAGGAGCCCGTGTTTGTAAATGCGAAACAATATCATGGTATATTAAGACGAAGGCAATCCCGTGCCAAAGCTGAATCTGAGCGTAAAGCTGTTAGGAATAGGAAGCCATACTTGCATGAGTCTCGGCATTTGCATGCGCTGCGAAGAGCAAGAGGATGTGGAGGCCGATTCCTAAATGCAAAGAAAGATGAGAACGAACATAATGATGTGGCATCAACTGACAAATCACAGTGCAATATCAACCTCAATTCTGATAAAAGTGACATCGCTTCATCAGATAGGACAGTCTAA 615 0.4618 MTSANDITDNEADEKQQSESEMQSSSANGTSDPDTGAQNVQFATPAQLGAGLAMAPPGYPYPDPYYRSIFSPYDTQAYAPQPYGGQPMVHFQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESERKAVRNRKPYLHESRHLHALRRARGCGGRFLNAKKDENEHNDVASTDKSQCNINLNSDKSDIASSDRTV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc9g00008 204 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Stsc9g00008 204 MobiDBLite consensus disorder prediction 1 42 - -
Stsc9g00008 204 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Stsc9g00008 204 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Stsc9g00008 204 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Stsc9g00008 204 MobiDBLite consensus disorder prediction 172 204 - -
Stsc9g00008 204 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Stsc9g00008 204 Gene3D - 108 169 - -
Stsc9g00008 204 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 200 IPR001289 GO:0003700|GO:0006355
Stsc9g00008 204 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Stsc9g00008 204 MobiDBLite consensus disorder prediction 19 42 - -
Stsc9g00008 204 MobiDBLite consensus disorder prediction 180 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc9g00008 Stsc-Chr9 54433 58448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc9g00008 49 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 65.161 8.53e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc9g00008 CBFB_NFYA 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc9g00008 K08064 - gmx:100809036 323.168