Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc9g00004 ATGGGAAGGGGTAAGATTGAGATCAAGAGGATCGAAAACTCAAGCAACAGGCAAGTGACCTACTCCAAGAGAAAGAATGGGATCCTCAAGAAGGCAAAGGAAATCACCGTTCTATGCGATGCTCAAGTTTCCCTCATCATCTTTGCTGCTTCTGGCAAGATGCATGACTATATCAGCCCTTCCACCACGTTAATTGACATCCTGGAGAGATACCACAAGACATCTGGTAAGAGACTCTGGGATGCCAAGCATGAGAACCTAAACAGTGAAATTGAAAGAGTCAAGAAGGAGAATGACGGCATGCAAATCGAACTCAGGCACCTGAAAGGGGAGGATATCAACTCACTTAACTACAAGGAGCTGATGGGCTTGGAGGAGGCCTTAGAAAATGGTCTCCAAAGTGTCCGAGAGAAACAGATGGAAGTGTACAGGATGTTCAGGAGAAATGACAAAATCTTGGAGGAGGAGAACAGGGAACTTAATTTTATCCTGCAACAACGTATGGCAGTGATGGAAGGTGCAAGAGAGATGGAGGATGGATTTGATCATCAAGGTATGAGAGATTTCAATAATTCTCAGATGCCTTTTGCCTTTCGCGTTCAGCCTATTCAGCCAAATCTTCAAGAGAGGATAGCAGGCCTTGTTAGAGAAGAAACCCGGAGGTCGGTAACTCAGGTTCTTCGAGATCCTAAAAGGCCCATACCGGGAATGCCCCAAGTCCTTGGAAATGAAGGTTTGGGGTTATGCAGTGGGATTTGA 759 0.4559 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNSEIERVKKENDGMQIELRHLKGEDINSLNYKELMGLEEALENGLQSVREKQMEVYRMFRRNDKILEEENRELNFILQQRMAVMEGAREMEDGFDHQGMRDFNNSQMPFAFRVQPIQPNLQERIAGLVREETRRSVTQVLRDPKRPIPGMPQVLGNEGLGLCSGI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc9g00004 252 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Stsc9g00004 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc9g00004 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Stsc9g00004 252 Pfam K-box region 82 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc9g00004 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc9g00004 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc9g00004 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc9g00004 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc9g00004 252 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Stsc9g00004 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc9g00004 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc9g00004 252 Coils Coil 77 111 - -
Stsc9g00004 252 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Stsc9g00004 252 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc9g00004 Stsc-Chr9 19236 24527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc9g00004 1 143 MADS-box Gene Family AT5G20240 67.133 1.38e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc9g00004 K-box 6.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc9g00004 K09264 - gmx:100817554 361.303