Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc99g00002 ATGGCTTTGCTTGAAGCCGAAGCCATCCCAGCTTTGTCACGGTTGACACCGCATCTCTCAACTTCTTATCTCAGCACAAGCACCATTGTGACGCTTTGCGTGTTCTTCACACTCCTCTGCGCTTGCATCGTCATTGGCCATCTTCTTGAAGAGAATAGGTGGGCTAATGAGTCCATAACCGCCCTCGTTCTGGGGTTGTGTTCTGGAGTGGTGGTGTTGCTGGTAACAAAGTTCCATAGTACCGAGCTTCTAATATTCAGTGAAAACTTGTTCTTTCTTTACTTGCTTCCTCCTATCATTTTCAACGCTGGTTTCCAAGTGAAAAAGAAACAGTTCTTCAAAAACTTCACAACTATACTGCTATTTGGAGTCTTTGGAACAGTCATCTCATTCTGCACCATATCTGTTGGTGCCTTTCTGCTGATTGGGAAGACTGGTATAGTTAGCCTCAGCATAGAAGATTACTTAGCCATTGGTGCAATACTTTCAGCAACTGACTCAGTTTGCACATTGCAGGTTCTGAGTCAAGATGAGACACCCTTGCTTTACAGCATTGTGTTTGGAGAGGGAGTAGTGAATGATGCTACTTCTATTGTGCTTTTTAATTCAGTTCAAACACTTGACTTTAGCAAACTCAATGCTGTTACAGCCTTGAAATTGTTGGGGACCTTCCTCTACCTCTTCTTCACTAGTACTGCCCTTGGCATAGCAGTTGGGCTTATAAGTGCATACATTATTAAAACACTTTACTTTGGAAGACACTCTACAGATCGCGAAGTAGCACTTATGATGTTGATGGCATATTTGTCCTACATGGTTGCTGAGCTTTTGGATCTCAGTGGGATTTTGACTATTTTCTTCTGTGGCATTGTTATGTCACACTACACATGGCACAATGTTACAGGAAGCTCAAGGATAACAACCAAGCACTCCTTTGCAACTATTTCATTCATTGCTGAAACATTTATATTTCTGTATGTTGGTATGGATGCATTAAATATTGACAAATGGAAAACCAGCAAAGCTAGTGCAGGAACTTCAATTGCTCTCAGCTCAGCTCTGTTAGCATTAGTGTTGATTGGTAGAGCTGCTTTTGTGTTCCCAATTGCTAACATTACAAATTGCATCAAGACAAGAGGGAGTACCAAAATTGAATTCCGATCGCAGTTCATAATATGGTGGGCAGGACTAATGAGAGGTGCTGTGACAATTGCCTTGACTTATAACCAGTTTCAGAAGTCCAATGATACATCATCTCAAGAATGTGCATTGATGATCACCTCTACCATAATCGTCGTCTTGTTCAGTACTCTGGTATTTGGTTCCATAACAAAGCCGCTGATTGAGGCTGTGCTTCTAAGGCATCCGAAGCCGCCCGTTTCAGATTCAACAAACATTCCGGACGATTTGAGATTACTATTTCTAGAAAATGAAGATCCAAGTGATCAAGGAAATAACAATCAGCAATTCGGCAGGCAAAGTAGCCTGAGTCTTCTAATACGTTACCCCACAACAACGGTTCACTATTTTTGGAGGAAATTTGATGATAAGTTTATGAGGCCAGTGTTTGGTGGAAGGGGTTTTACTCGAGTGGTTCATGGTTCATCTTCTGGTGAAGTTGAGGAGATTTCTTGA 1635 0.4171 MALLEAEAIPALSRLTPHLSTSYLSTSTIVTLCVFFTLLCACIVIGHLLEENRWANESITALVLGLCSGVVVLLVTKFHSTELLIFSENLFFLYLLPPIIFNAGFQVKKKQFFKNFTTILLFGVFGTVISFCTISVGAFLLIGKTGIVSLSIEDYLAIGAILSATDSVCTLQVLSQDETPLLYSIVFGEGVVNDATSIVLFNSVQTLDFSKLNAVTALKLLGTFLYLFFTSTALGIAVGLISAYIIKTLYFGRHSTDREVALMMLMAYLSYMVAELLDLSGILTIFFCGIVMSHYTWHNVTGSSRITTKHSFATISFIAETFIFLYVGMDALNIDKWKTSKASAGTSIALSSALLALVLIGRAAFVFPIANITNCIKTRGSTKIEFRSQFIIWWAGLMRGAVTIALTYNQFQKSNDTSSQECALMITSTIIVVLFSTLVFGSITKPLIEAVLLRHPKPPVSDSTNIPDDLRLLFLENEDPSDQGNNNQQFGRQSSLSLLIRYPTTTVHYFWRKFDDKFMRPVFGGRGFTRVVHGSSSGEVEEIS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc99g00002 544 Pfam Sodium/hydrogen exchanger family 36 449 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Stsc99g00002 544 Gene3D - 151 203 - -
Stsc99g00002 544 PRINTS Na+/H+ exchanger signature 104 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc99g00002 544 PRINTS Na+/H+ exchanger signature 90 101 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc99g00002 544 PRINTS Na+/H+ exchanger signature 159 169 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc99g00002 544 PRINTS Na+/H+ exchanger signature 119 127 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc99g00002 544 NCBIfam sodium/hydrogen exchanger 3 33 454 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc99g00002 544 PANTHER SODIUM/HYDROGEN EXCHANGER 33 523 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc99g00002 Stsc-Chr99 10788 15809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc99g00002 19 537 Antiporters AT3G05030 62.357 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc99g00002 K14724 - qsa:O6P43_026859 800.816