Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc98g00010 ATGGCTGAAGATACTTCGGTTCTTGATTTGCCTCATGGAAGTCTTGGCCTTTTGAAAGATCAGGTTCATTTGGCTAAAAGGAAAGACTTGGATCGGTATGAGATCGCGGCGATCCAAGATCAGTTATCATTCGAGAAAGGATTTTTCATGGTAATCCGCGCGTGCAAGATGTTGGCGCAAAAGAACGATGGAATGATATTGGTAGGCGTGGCAGGTCCTTCGGGTGCAGGGAAGACTATGTTCACTGAAAAGATCCTAAACTTCATGCCAAGCATTGCAGTGATTTCAATGGACAATTACAATGATGCAAGTAGAATTGTTGATGGAAACTTTGATGATCCGCGCTTAACAGATTATGAAACCTTGCTCCAAAATTTACATGATTTAAAGGAAGGAAAGGCAGCGCAAGTTCCTATATATGATTACAAGACGAGTTCACGAACAGGATACAGAACCGTTGATGTTCCAAGCTCCCGAATTGTGATCATAGAGGGAATTTATGCCTTGAATGAGAAGCTACGGCCGCTACTAGACCTTCGAGTATCTGTCACCGGTGGAGTACACCTTGACCTTGTTAAACGAGTTATACGCGACATACAACGAGCTGGACAAGAACCCGAAGAAATCATTCACCAAATATCTGAGACGGTATATCCAATGTACAAAGCATATATTGAGCCGGATCTTCAAACTGCACACATAAAAATCATTAACAAGTTCAATCCATTCACTGCATTCCAAAGTCCTACATACATATTAAAGTCAGCAAGGAATGTAACAGTGGAACAAGTTAAAGAGGTAATCTCCAAAGATTTTCACGAAACGAAGGAGCAGACTTATGACATATATCTTCTACCTCCTGGTGAAGATCCAGAGAGTTGTCAATCCTATCTACGGATGCGAAATACGGATGGAAAATACGTCCTCATGTTCGAGGAATGGGTGACAGATGATCCATTTGTGATATCACCCAGAATCACTTTTTCTGTTAGTGTGCGCCTCCTCGGTGGACTAATGGGGTTGGGATACACAATAGCAACCATCCTTAAAAGAAACAGCCATATCTTATCAGATGAAAGTGTTTGTGTTAAACTAGATTGGCTTGAACAGCTTAATAGACATTATGTTCAGCTACTTGGAAGAGATCGCTCACTAGTAACTAAAAAAGCGCAGCAGTTGGGTCTAGAAGGTTCTTACATTCCTCGAACCTACATCGAGCAGATCCAACATGAAAAGCTTGTTAAAGAAGTTATGGCCCTGCCGGAAGATTTAAAGATGACGTTGAGCCTTGACGACGACTTCGTGTCTAGCCCGAAAGATTGTGCTGACCAGGTTTCCATGACCATGAGACATAAGCATATAGGTTTGTCTAGATCATTTACAAATCTAAGAGACAGGAATCAAGCCAAACTTGCAGGATATGTCTCCAACAATATAGACCTTCATGGAAGAAATGATTCAGTTGAAACCAAAACAATGGCAAATCAGGAAACCATAACTCAACTTTCGGAACAAATTTCTTCCTTATATGATAGAATGGATGATTTTGCAAACCATATTGAAGCGCTGAACTCCAACTTATCCATGGAGAAAAATTGTCAATGCCAACAAGATATGAACCCACAAGTTGGTACTTGCAATGGTTGTGCTCCTACCTGTTACTTAATTTCTAGCTTGAGGAACGGTTCCTCCGCCATGTCGCAACCATCTAAGGAGTTTACTTTAATGGATGAGATATCAGGTATTATAAGGGGTCAGCATCTGATCATGCATCAATTGGACAATCTCAATAAACTAGTTGTGAGTAAAATTGAAGAGAGGTCTCACCAAGTAGGAGCTATGAAGAAAGGTGCACTAATAAGTTCTTCAACATATTCAGATTCAGCTGGACCACAAGTTATGATGGGTTTGGGTTTAGGTTGTTTAGGAATTTTCTTTATGATGGGTATTTTTTATAGATTGAGGAGGTAG 1971 0.4059 MAEDTSVLDLPHGSLGLLKDQVHLAKRKDLDRYEIAAIQDQLSFEKGFFMVIRACKMLAQKNDGMILVGVAGPSGAGKTMFTEKILNFMPSIAVISMDNYNDASRIVDGNFDDPRLTDYETLLQNLHDLKEGKAAQVPIYDYKTSSRTGYRTVDVPSSRIVIIEGIYALNEKLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAYIEPDLQTAHIKIINKFNPFTAFQSPTYILKSARNVTVEQVKEVISKDFHETKEQTYDIYLLPPGEDPESCQSYLRMRNTDGKYVLMFEEWVTDDPFVISPRITFSVSVRLLGGLMGLGYTIATILKRNSHILSDESVCVKLDWLEQLNRHYVQLLGRDRSLVTKKAQQLGLEGSYIPRTYIEQIQHEKLVKEVMALPEDLKMTLSLDDDFVSSPKDCADQVSMTMRHKHIGLSRSFTNLRDRNQAKLAGYVSNNIDLHGRNDSVETKTMANQETITQLSEQISSLYDRMDDFANHIEALNSNLSMEKNCQCQQDMNPQVGTCNGCAPTCYLISSLRNGSSAMSQPSKEFTLMDEISGIIRGQHLIMHQLDNLNKLVVSKIEERSHQVGAMKKGALISSSTYSDSAGPQVMMGLGLGCLGIFFMMGIFYRLRR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc98g00010 656 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Stsc98g00010 656 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Stsc98g00010 656 SUPERFAMILY CYTH-like phosphatases 261 407 IPR033469 -
Stsc98g00010 656 PANTHER URIDINE KINASE 41 422 - -
Stsc98g00010 656 Gene3D - 65 272 IPR027417 -
Stsc98g00010 656 CDD UMPK_like 67 239 - -
Stsc98g00010 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 236 IPR027417 -
Stsc98g00010 656 Pfam CYTH domain 269 404 IPR023577 -
Stsc98g00010 656 PRINTS Uridine kinase signature 224 237 - -
Stsc98g00010 656 PRINTS Uridine kinase signature 188 198 - -
Stsc98g00010 656 PRINTS Uridine kinase signature 132 147 - -
Stsc98g00010 656 PRINTS Uridine kinase signature 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc98g00010 Stsc-Chr98 56929 61188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc98g00010 66 236 PRT Gene Family AT5G40870 27.222 2.06e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc98g00010 K00876 - gmx:100781286 912.524