Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc988g00002 ATGGCTCCTCCTCTTCATCTTCATGATCATCAACATTTTCTAGTGATTATTATTATGTTGACTTTGTCAAAATCATTTTTTATCCCTAGCCATGGTATATTGGTTCCTGATTATTATGAGAAAGTGTGCCCTGAAGCATTGCCAATCATAACATCAGTTGTTGAGAAATCAATCATTCGTGAAACACGCATTGGGGCATCCTTACTTCGTTTGCATTTCCATGATTGCTTCGTTAATTTTGATGAAGAATATGATGTCAACAAGGATCTATATGCAGAGAGTTATTTGGATGACGAGGAATGGGATGGAAATGACTACACTTCAGAGGAAAAAAGTGATATAGAAGTTAAGGATAAAGGTGAGTGTTTTGCCAGTGATAGTAAGAAAGGAAAATTCAAGAATGTCCTAGGAAAAAGATTTGACAATGAAGGAAAAGAAACTCAACAATATGCTTCAGCACAAGCAAAGGCAAAATCACAATTACAAGCTAAACAAACAAAGAGGGGATGTGATGGATCAGTTCTATTGGATGATACAGCATTGTTGAAGGGAGAGAAGACAGCAGGCCCAAACTTCAATTCATTAAGAGGATTCGAGGTGGTTGATGAAATCAAAGAAGCTGTAGACAATGCCTGCCATGGCTCTCTCGTCTCTTGTGCTGATATCTTAGCAATTGCAGCTCGTGATTCCATAGCCATTTTGGGAGGCAAACAATATTGGTACCAAGTGTTATTAGGAAGAAGGGATGCAAGAACAGCAAGCTTGGATGATGCAAACAAAAGTCTCCCTCCACCATTTTCAAACTTCTCAATGCTCCTTCAATTTTTCCAGCCTCATGGATTGGACCTTAAGGATCTCGTGGCGCTCTCCGGCGGCCACACTGTCGGATTCGCCAAGTGCTCCTCCTTCAAGGACAGGATCTACAATGACACCAACATTGATCCCTATTTTGCAACCACTTTGAGAAACTCATGCCCTAGAATAATTAGTAATAATGGTGACAATAATAATTTATTGGCACCATTGGATTCTACTCCTGGAATTGGTGACGCAAATTATTACACTGCTTTGTTGAATAAAAGGGGGCTTCTTCATTCAGATCAAGAGCTATATAAGGGTGATGGTGGTGAGAGTGATGAGTTGGTGAAGCTTTATAGTAGTAACCCTTATGCTTTTGCTAAGGACTTTGGATATTCCATGGTTAAGATGGGTAACATTAAGCCTCTTACTGGATATGAGGGAGAAATTAGGTTCAATTGCAGAAAAGTCAACTAA 1275 0.3945 MAPPLHLHDHQHFLVIIIMLTLSKSFFIPSHGILVPDYYEKVCPEALPIITSVVEKSIIRETRIGASLLRLHFHDCFVNFDEEYDVNKDLYAESYLDDEEWDGNDYTSEEKSDIEVKDKGECFASDSKKGKFKNVLGKRFDNEGKETQQYASAQAKAKSQLQAKQTKRGCDGSVLLDDTALLKGEKTAGPNFNSLRGFEVVDEIKEAVDNACHGSLVSCADILAIAARDSIAILGGKQYWYQVLLGRRDARTASLDDANKSLPPPFSNFSMLLQFFQPHGLDLKDLVALSGGHTVGFAKCSSFKDRIYNDTNIDPYFATTLRNSCPRIISNNGDNNNLLAPLDSTPGIGDANYYTALLNKRGLLHSDQELYKGDGGESDELVKLYSSNPYAFAKDFGYSMVKMGNIKPLTGYEGEIRFNCRKVN 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc988g00002 424 Gene3D - 34 116 - -
Stsc988g00002 424 PANTHER PEROXIDASE 72-RELATED 33 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc988g00002 424 Gene3D Peroxidase, domain 2 263 403 - -
Stsc988g00002 424 Pfam Peroxidase 52 387 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc988g00002 424 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc988g00002 424 PRINTS Plant peroxidase signature 43 62 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc988g00002 424 PRINTS Plant peroxidase signature 177 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc988g00002 424 PRINTS Plant peroxidase signature 67 87 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc988g00002 424 SUPERFAMILY Heme-dependent peroxidases 168 424 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc988g00002 424 Gene3D - 168 421 - -
Stsc988g00002 424 ProSiteProfiles Plant heme peroxidase family profile. 33 424 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc988g00002 424 CDD secretory_peroxidase 34 423 IPR033905 GO:0004601|GO:0042744
Stsc988g00002 424 ProSitePatterns Peroxidases proximal heme-ligand signature. 285 295 IPR019793 -
Stsc988g00002 424 FunFam Peroxidase 263 403 - -
Stsc988g00002 424 SUPERFAMILY Heme-dependent peroxidases 35 79 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc988g00002 424 ProSitePatterns Peroxidases active site signature. 65 76 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc988g00002 Stsc-Chr988 10977 17126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc988g00002 34 79 Peroxidase AT5G05340 45.652 5.27e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc988g00002 K00430 - gmx:100810852 372.859