Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc982g00003 ATGGCGACAAGGAATCGCACTCTCCTCTTCCGAAAGCACCGCGATGCATTGAAGAGCGTTCGCGCTCCTTCCTCCTCTTCCCTGCCCTCCACCTCCTCCTCCGCCGGCGGCAGAGGCAGAGGCGGCGCTGCTGGCCCCGTCATCGAACTCGTCAGCACCTCGCTCCTCAACCCTAATCGCTCTTACGCCCCTCTAAGCACCGACGATCCCGGTAGCTCAAGTAAGGATCTGAATCTGGTTACAGTCGGATTGCCACCAGCATGGGTGGATGTGTCTGAAGAAATATCAGCAAATGTGCAGCGCGCTAAAGCAAAAATGTCAGAATTGGCCAAGGCTCATGCAAAAGCCTTAATGCCATCATTTGGTGACGGTAAGGAAGAACAACGTGTTATCGAGTCCCTAACATATGAGATAACTGACTTGATAAAGAGATCAGAGAAGAGACTGCAGAGACTTTCTGCTGCTGGCCCATCTGAGGATTCCAACGTGAGGAAGAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAACCTCTCTGTAGAGCTCCGCAAGAAACAATCAACATATTTGAAGCGCCTAAGGCAACAAAAGGAGGGTCAAGATGGGGTTGATTTAGAGATCAACATGAATGGAAGTAAATCCACATATGAAGATGATGATCTGGATAATATGATATTTAATGAACATCAGATGGCCAAGCTGAAAAAAACTGAAGCATTCACAGTGGAAAGAGAAAAAGAAATTCAGCAGGTTGTTGAATCTGTAAATGAGCTTGCTCAAATTATGAAGGATTTATCAGTCCTAGTCATTGACCAGGTCAGCAGATGCCGTCCTTCAATAGGGAATTCACAACTTTGTTATCCATAA 867 0.4706 MATRNRTLLFRKHRDALKSVRAPSSSSLPSTSSSAGGRGRGGAAGPVIELVSTSLLNPNRSYAPLSTDDPGSSSKDLNLVTVGLPPAWVDVSEEISANVQRAKAKMSELAKAHAKALMPSFGDGKEEQRVIESLTYEITDLIKRSEKRLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEGQDGVDLEINMNGSKSTYEDDDLDNMIFNEHQMAKLKKTEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQVSRCRPSIGNSQLCYP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc982g00003 288 PANTHER SYNTAXIN 91 273 IPR045242 -
Stsc982g00003 288 MobiDBLite consensus disorder prediction 20 37 - -
Stsc982g00003 288 SUPERFAMILY t-snare proteins 83 272 IPR010989 GO:0016020|GO:0016192
Stsc982g00003 288 MobiDBLite consensus disorder prediction 13 43 - -
Stsc982g00003 288 Coils Coil 92 112 - -
Stsc982g00003 288 Gene3D - 85 275 - -
Stsc982g00003 288 SMART SynN_4 79 194 IPR006011 GO:0016020
Stsc982g00003 288 FunFam Syntaxin-43 85 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc982g00003 Stsc-Chr982 4999 9520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc982g00003 1 272 SNARE and Associated Proteins AT3G05710 72.464 2.11e-140 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc982g00003 K08489 - gmx:100796741 429.483