Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc982g00002 ATGGCGACAAGGAATCGCACTCTCCTCTTCCGAAAGCACCGCGATGCATTGAAGAGCGTTCGCGCTCCTTCCTCCTCTTCCCTGCCCTCCACCTCCTCCTCCGCCGGCGGCAGAGGCAGAGGCGGCGCTGCTGGCCCCGTCATCGAACTCGTCAGCACCTCGCTCCTCAACCCTAATCGCTCTTACGCCCCTCTAAGCACCGACGATCCCGGTAGCTCAAGTAAGGATCTGAATCTGGTTACAGTCGGATTGCCACCAGCATGGGTGGATGTGTCTGAAGAAATATCAGCAAATGTGCAGCGCGCTAAAGCAAAAATGTCAGAATTGGCCAAGGCTCATGCAAAAGCCTTAATGCCATCATTTGGTGACGGTAAGGAAGAACAACGTGTTATCGAGTCCCTAACATATGAGATAACTGACTTGATAAAGAGATCAGAGAAGAGACTGCAGAGACTTTCTGCTGCTGGCCCATCTGAGGATTCCAACGTGAGGAAGAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAACCTCTCTGTAGAGCTCCGCAAGAAACAATCAACATATTTGAAGCGCCTAAGGCAACAAAAGGAGGGTCAAGATGGGGTTGATTTAGAGATCAACATGAATGGAAGTAAATCCACATATGAAGATGATGATCTGGATAATATGATATTTAATGAACATCAGATGGCCAAGCTGAAAAAAACTGAAGCATTCACAGTGGAAAGAGAAAAAGAAATTCAGCAGGTTGTTGAATCTGTAAATGAGCTTGCTCAAATTATGAAGGATTTATCAGTCCTAGTCATTGACCAGGGTACTATTGTTGATAGAATAGACTACAACATTCAGAATGTAGCCACTACAGTCGAGGATGGCCTTAAACAGCTTCAGAAGGCAGAGAGAAGCCAGAAAAAGGGGGGCATGGTAATGTGTGCGACGGTGCTGCTTATCATGTGCTTTGTCATGTTGGTTCTCTTAGTCCTTAAGGAAATTATCTTGTGA 1005 0.4667 MATRNRTLLFRKHRDALKSVRAPSSSSLPSTSSSAGGRGRGGAAGPVIELVSTSLLNPNRSYAPLSTDDPGSSSKDLNLVTVGLPPAWVDVSEEISANVQRAKAKMSELAKAHAKALMPSFGDGKEEQRVIESLTYEITDLIKRSEKRLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEGQDGVDLEINMNGSKSTYEDDDLDNMIFNEHQMAKLKKTEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERSQKKGGMVMCATVLLIMCFVMLVLLVLKEIIL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc982g00002 334 SUPERFAMILY t-snare proteins 84 293 IPR010989 GO:0016020|GO:0016192
Stsc982g00002 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 238 300 IPR000727 -
Stsc982g00002 334 SMART tSNARE_6 233 300 IPR000727 -
Stsc982g00002 334 Gene3D - 85 292 - -
Stsc982g00002 334 ProSitePatterns Syntaxin / epimorphin family signature. 244 283 IPR006012 GO:0005484|GO:0006886|GO:0016020
Stsc982g00002 334 Coils Coil 92 112 - -
Stsc982g00002 334 SMART SynN_4 79 194 IPR006011 GO:0016020
Stsc982g00002 334 PANTHER SYNTAXIN 91 319 IPR045242 -
Stsc982g00002 334 FunFam Syntaxin-43 85 292 - -
Stsc982g00002 334 MobiDBLite consensus disorder prediction 20 37 - -
Stsc982g00002 334 MobiDBLite consensus disorder prediction 13 43 - -
Stsc982g00002 334 Pfam SNARE domain 274 326 IPR000727 -
Stsc982g00002 334 CDD SNARE_syntaxin16 243 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc982g00002 Stsc-Chr982 4998 9520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc982g00002 1 334 SNARE and Associated Proteins AT5G26980 75.224 0.0 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc982g00002 K08489 - gmx:100796741 543.888