Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc982g00001 ATGCTTAGGAATGCTACGTGGACACTCTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCCCTTGCTAGTCTTATCCATTCAAATGATGAAGAAGTCTTGACCGATGCTTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCTCGTCTAGTTGAGCTTTTAATGCACCCATCCCCTTCAGTTCTAATTCCTGCTCTACGTACAGTTGGAAATATTGTCACTGGAGATGATATGCAAACTCAGGTTATTATCAATCATCAAGCTCTTCCTTGCCTTCTTAATCTGTTGTCTAATAATTATAAAAAAAGCATAAAGAAGGAAGCTTGTTGGACCATATCCAACATCACAGCTGGTAATAAACAGCAGATACAGGCAGTAATCGAGTCTAATATAATTGGTCCTTTGGTCAACCTGCTTCAAAATGCTGAGTTTGACATCAAGAAAGAGGCTGCTTGGGCTATATCAAATGCTACATCTGGTGGATCTCATGAACAAATCAAGTACCTGGTAAGCCAAGGGTGTATCAAGCCCTTGTGTGATCTTCTCATCTGTCCTGATCCTAGGATTGTGACAGTTTGTCTGGAAGGACTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAATATGGGCAATACCGGTGATGTGAATCTATATGCCCAAATGATTGACGATGCAGAGGGTTTGGAGAAAATCGAGAACCTCCAGAGTCATGATAACACGGAGATTTATGAAAAGGCAGTGAAGATTCTTGAAACATACTGGTTGGAGGAAGACGATGAGACTATGCCTCCAGGGGATGCTTCCCAACCAGGGTTCAACTTTGGTGGCTCTGATGGTCCTGCTGTGCCCCCCGGTGGATTCAACTTCTAA 942 0.4278 MLRNATWTLSNFCRGKPQPPFDQVKPALPALASLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLSNNYKKSIKKEACWTISNITAGNKQQIQAVIESNIIGPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNMGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDETMPPGDASQPGFNFGGSDGPAVPPGGFNF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc982g00001 313 SMART arm_5 142 182 IPR000225 GO:0005515
Stsc982g00001 313 SMART arm_5 16 55 IPR000225 GO:0005515
Stsc982g00001 313 SMART arm_5 99 140 IPR000225 GO:0005515
Stsc982g00001 313 SMART arm_5 57 97 IPR000225 GO:0005515
Stsc982g00001 313 SMART arm_5 185 225 IPR000225 GO:0005515
Stsc982g00001 313 Pfam Armadillo/beta-catenin-like repeat 27 54 IPR000225 GO:0005515
Stsc982g00001 313 Pfam Armadillo/beta-catenin-like repeat 58 96 IPR000225 GO:0005515
Stsc982g00001 313 Pfam Armadillo/beta-catenin-like repeat 186 223 IPR000225 GO:0005515
Stsc982g00001 313 Pfam Armadillo/beta-catenin-like repeat 100 140 IPR000225 GO:0005515
Stsc982g00001 313 Pfam Armadillo/beta-catenin-like repeat 142 181 IPR000225 GO:0005515
Stsc982g00001 313 PANTHER IMPORTIN ALPHA 1 284 - -
Stsc982g00001 313 Pfam Atypical Arm repeat 240 286 IPR032413 -
Stsc982g00001 313 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 26 68 IPR000225 GO:0005515
Stsc982g00001 313 SUPERFAMILY ARM repeat 2 283 IPR016024 -
Stsc982g00001 313 Gene3D - 1 279 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc982g00001 Stsc-Chr982 1 3939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc982g00001 21 247 U-box Gene Family AT2G23140 23.684 5.35e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc982g00001 K15042 - gmx:100797267 606.675