Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc97g00003 ATGGGCGGAAAAGGCGGCCAGATCTACGTAGTCACCGATTCCTCCGACAGGGACCCGGCCAACCCCGTCCCCGGAACCCTCCGCCACGCCGTAATCCAAGACGTTCCACTCTGGATCGTCTTCTCCGGCGACATGACCATAACCCTAAAACACGAGCTAATCTTCAACAGCTACAAGACGGTGGACGGCCGCGGCGCCAACGTCCACATCACCGGCCACGGCTGCATCACACTCCAATACATCTCGAACATCNNNNNNNNNNCCGGCAACACCAACATAAGAGCCTCTCCGACGCACGTCGGGTGGAGGGGAGTATCCGACGGCGACGGAATCTCCATCTTCGGAGCACGCAAGATCTGGATCGACCATTGCTCGCTCTCGTACTGTACGGACGGGCTAATCGATGCGATAATGGGGTCGACGGGGCTCACGATTTCGAACAACCATTTCGCCCACCACGACGAGGTGATGCTGTTGGGGCATAACGATAAGTACTTGCCGGACAAGGGAATGCAGGTCACCATCGCTTTCAACCACTTCGGTGAAGGTTTGGTGCAGAGAATGCCGCGGTGCAGATTGGGTTATATTCATGTTGTTAACAATGATTTCACTCAGTGGGAGATGTATGCCATCGGAGGAAGTGCTAACCCTACCATTAACAGCCAGGGTAACCGTTACACTGCTCCCGCCGATCCTAATGCCAAGGAGGTGACGAAGCGCGTGGACACAAACGAGGGAGAATGGAGCGATTGGAATTGGAGAACGGACGGGGACATAATGGTAAATGGAGCATTCTTTGTGCCATCTGGGGGAGGTGTGAGTGCAGAGTATGCAGAGGCATCAAGCTTGCAACCGAAATCCGCCGTTCAAATAGACCAGCTTACCATGTATTCCGGCGTCTTCGGTGATCCCAGGGACAATGGGGACTTATTTCCCGGTTACACCGGAGGTGGGACCGTCACAAGCGCCACCAACAAGGGTGGAACTAGTGGTGGGTCCGGTGGTGGCAGCGATGGTGGGGACTTCTTCGGGATGATATTCGGCGGTGGTAGCAGCCAAGCAGCACCACCACCCTCATCAATTCTTGTATTTGTTTCAATATTTTTGTCCCTTTTAATTATTTTCATTTTGGACACTACCACCAACCATGCTATTTTATTATCATTATTATGA 1173 0.5277 MGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDVPLWIVFSGDMTITLKHELIFNSYKTVDGRGANVHITGHGCITLQYISNIXXXXGNTNIRASPTHVGWRGVSDGDGISIFGARKIWIDHCSLSYCTDGLIDAIMGSTGLTISNNHFAHHDEVMLLGHNDKYLPDKGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPADPNAKEVTKRVDTNEGEWSDWNWRTDGDIMVNGAFFVPSGGGVSAEYAEASSLQPKSAVQIDQLTMYSGVFGDPRDNGDLFPGYTGGGTVTSATNKGGTSGGSGGGSDGGDFFGMIFGGGSSQAAPPPSSILVFVSIFLSLLIIFILDTTTNHAILLSLL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc97g00003 390 PRINTS Pollen allergen Amb family signature 16 41 IPR018082 -
Stsc97g00003 390 PRINTS Pollen allergen Amb family signature 187 206 IPR018082 -
Stsc97g00003 390 PRINTS Pollen allergen Amb family signature 251 275 IPR018082 -
Stsc97g00003 390 PRINTS Pollen allergen Amb family signature 280 303 IPR018082 -
Stsc97g00003 390 PRINTS Pollen allergen Amb family signature 52 68 IPR018082 -
Stsc97g00003 390 PRINTS Pollen allergen Amb family signature 209 228 IPR018082 -
Stsc97g00003 390 MobiDBLite consensus disorder prediction 308 336 - -
Stsc97g00003 390 MobiDBLite consensus disorder prediction 317 332 - -
Stsc97g00003 390 SUPERFAMILY Pectin lyase-like 2 288 IPR011050 -
Stsc97g00003 390 Pfam Pectate lyase 53 224 IPR002022 -
Stsc97g00003 390 SMART amb_all 44 232 IPR002022 -
Stsc97g00003 390 Gene3D - 1 302 IPR012334 -
Stsc97g00003 390 PANTHER PECTATE LYASE 18-RELATED 1 301 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc97g00003 Stsc-Chr97 5197 11073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc97g00003 1 379 Polysaccharide Lyase AT3G53190 62.371 8.87e-165 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc97g00003 K01728 - gmx:100808438 650.973