Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc97g00002 ATGCTTCTTCATCATATCACCTCAATTCTTTTAATGTGCCTTTTCCTCAGTTCATTCTCTCCTCCAATCAAAGCTACCTTCAACTCCTTCAACCACACCCTGCCCCACCAACACCCTTACCCTGAAGCTGTGGTTCATCAAGTTCAAAGGCAAATCAATGCCTCACTTTCAAGAAGGGAGCTTCTCTCAAAAGACCAATCCTCCTCCGCCTGCCTCACCGGAAACCCCATCGACGACTGCTGGCGCTGCGACCCAAACTGGTCCGCAAACCGCCAGAAGCTCGCCGACTGCGGCATCGGCTTCGGACGCGACGCAATGGGCGGAAAAGGCGGCCAGATCTACGTAGTCACCGATTCCTCCGACAGGGACCCGGCCAACCCCGTCCCCGGAACCCTCCGCCACGCCGTAATCCAAGACGTTCCACTCTGGATCGTCTTCTCCGGCGACATGACCATAACCCTAAAACACGAGCTAATCTTCAACAGCTACAAGACGGTGGACGGCCGCGGCGCCAACGTCCACATCACCGGCCACGGCTGCATCACACTCCAATACATCTCGAACATCNNNNNNNNNNCCGGCAACACCAACATAAGAGCCTCTCCGACGCACGTCGGGTGGAGGGGAGTATCCGACGGCGACGGAATCTCCATCTTCGGAGCACGCAAGATCTGGATCGACCATTGCTCGCTCTCGTACTGTACGGACGGGCTAATCGATGCGATAATGGGGTCGACGGGGCTCACGATTTCGAACAACCATTTCGCCCACCACGACGAGGTGATGCTGTTGGGGCATAACGATAAGTACTTGCCGGACAAGGGAATGCAGGTCACCATCGCTTTCAACCACTTCGGTGAAGGTTTGGTGCAGAGAATGCCGCGGTGCAGATTGGGTTATATTCATGTTGTTAACAATGATTTCACTCAGTGGGAGATGTATGCCATCGGAGGAAGTGCTAACCCTACCATTAACAGCCAGGGTAACCGTTACACTGCTCCCGCCGATCCTAATGCCAAGGAGGTGACGAAGCGCGTGGACACAAACGAGGGAGAATGGAGCGATTGGAATTGGAGAACGGACGGGGACATAATGGTAAATGGAGCATTCTTTGTGCCATCTGGGGGAGGTGTGAGTGCAGAGTATGCAGAGGCATCAAGCTTGCAACCGAAATCCGCCGTTCAAATAGACCAGCTTACCATGTATTCCGGCGTCTTCGGTGATCCCAGGGACAATGGGGACTTATTTCCCGGTTACACCGGAGGTGGGACCGTCACAAGCGCCACCAACAAGGGTGGAACTAGTGGTGGGTCCGGTGGTGGCAGCGATGGTGGGGACTTCTTCGGGATGATATTCGGCGGTGGTAGCAGCCAAGCAGCACCACCACCCTCATCAATTCTTGTATTTGTTTCAATATTTTTGTCCCTTTTAATTATTTTCATTTTGGACACTACCACCAACCATGCTATTTTATTATCATTATTATGA 1488 0.5276 MLLHHITSILLMCLFLSSFSPPIKATFNSFNHTLPHQHPYPEAVVHQVQRQINASLSRRELLSKDQSSSACLTGNPIDDCWRCDPNWSANRQKLADCGIGFGRDAMGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDVPLWIVFSGDMTITLKHELIFNSYKTVDGRGANVHITGHGCITLQYISNIXXXXGNTNIRASPTHVGWRGVSDGDGISIFGARKIWIDHCSLSYCTDGLIDAIMGSTGLTISNNHFAHHDEVMLLGHNDKYLPDKGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPADPNAKEVTKRVDTNEGEWSDWNWRTDGDIMVNGAFFVPSGGGVSAEYAEASSLQPKSAVQIDQLTMYSGVFGDPRDNGDLFPGYTGGGTVTSATNKGGTSGGSGGGSDGGDFFGMIFGGGSSQAAPPPSSILVFVSIFLSLLIIFILDTTTNHAILLSLL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc97g00002 495 Gene3D - 74 407 IPR012334 -
Stsc97g00002 495 PANTHER PECTATE LYASE 18-RELATED 32 406 IPR045032 GO:0030570
Stsc97g00002 495 FunFam Pectate lyase 74 407 - -
Stsc97g00002 495 SMART amb_all 149 337 IPR002022 -
Stsc97g00002 495 MobiDBLite consensus disorder prediction 422 437 - -
Stsc97g00002 495 Pfam Pectate lyase 158 329 IPR002022 -
Stsc97g00002 495 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Stsc97g00002 495 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Stsc97g00002 495 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Stsc97g00002 495 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Stsc97g00002 495 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Stsc97g00002 495 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Stsc97g00002 495 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Stsc97g00002 495 SUPERFAMILY Pectin lyase-like 75 392 IPR011050 -
Stsc97g00002 495 MobiDBLite consensus disorder prediction 413 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc97g00002 Stsc-Chr97 5197 11073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc97g00002 1 484 Polysaccharide Lyase AT3G53190 60.081 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc97g00002 K01728 - gmx:100808438 800.045