Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc973g00002 ATGGCCACTGTTACAGAGTTCATGGTGGATGGTTCCCTTAGGCATGTGTTACTTCGTAAGGACAGGTATCTTGATCGTCGCAAGAGACTGATTATTGCAATGGATGCAGCTTTTGGAATGGAATATCTGCACTCAAAGAATATCGTGCATTTTGACTTAAAATGTGATAATTTGCTTGTTAACTTGAAAGATCCTATACGGCCAATATGCAAGGTTGGTGATTTTGGCTTGTCAAAAATCAAACGAAATACCTTGGTTTCTGGTGGGGTACGGGGGACTCTACCATGGATGGCACCGGAGCTCCTGAACGGTAGCAGCAACAAGGTCTCAGAAAAGGTTGATGTGTTTTCTTTTGGCATTGTATTATGGGAGATTCTGACGGGTGAGGAGCCATATGCGAATATGCACTACGGTGCAATTATAGGTGGAATTGTGAATAACACATTGAGGCCAACAATTCCAAGTTATTGTGACAATGAATGGAGAGCTCTGATGGAGCAATGTTGGGCGCCTAACCCTGCAGCTCGGCCTTCCTTCACCGAAATTGCTAGTCGGTTGCGTGTAATGTCGGCGGCAGCTAGCCAAACCAAAACACAGGGCCACAAGGCATCTAAGTGA 618 0.4515 MATVTEFMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPIRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDNEWRALMEQCWAPNPAARPSFTEIASRLRVMSAAASQTKTQGHKASK 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc973g00002 205 SUPERFAMILY Protein kinase-like (PK-like) 3 185 IPR011009 -
Stsc973g00002 205 ProSitePatterns Serine/Threonine protein kinases active-site signature. 48 60 IPR008271 GO:0004672|GO:0006468
Stsc973g00002 205 CDD STKc_MAP3K-like 4 186 - -
Stsc973g00002 205 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 11 203 - -
Stsc973g00002 205 Pfam Protein tyrosine and serine/threonine kinase 3 186 IPR001245 GO:0004672|GO:0006468
Stsc973g00002 205 PRINTS Tyrosine kinase catalytic domain signature 5 18 IPR001245 GO:0004672|GO:0006468
Stsc973g00002 205 PRINTS Tyrosine kinase catalytic domain signature 42 60 IPR001245 GO:0004672|GO:0006468
Stsc973g00002 205 PRINTS Tyrosine kinase catalytic domain signature 157 179 IPR001245 GO:0004672|GO:0006468
Stsc973g00002 205 PRINTS Tyrosine kinase catalytic domain signature 113 135 IPR001245 GO:0004672|GO:0006468
Stsc973g00002 205 ProSiteProfiles Protein kinase domain profile. 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc973g00002 205 Gene3D Transferase(Phosphotransferase) domain 1 1 205 - -
Stsc973g00002 205 PANTHER SERINE-THREONINE PROTEIN KINASE 2 187 - -
Stsc973g00002 205 SMART serkin_6 4 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc973g00002 Stsc-Chr973 18932 22734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc973g00002 1 205 MAP Kinase Kinase Kinase AT1G16270 89.855 1.77e-132 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Stsc973g00002 PK_Tyr_Ser-Thr 4.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc973g00002 - - mtr:120578222 391.349