Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc973g00001 ATGGAACAATCAAGATTCCAAAAAACGATTCCAAGCAATACAATGGAACCTAGAAATGGTGAATTCCAGCCTGGGTTGCCGCCAATAATGCCGGATCGACCGGATGACATGCATACAATTAGAAGACCACCTAATGTTGGTATGACACAAGCAAAACCTGTGCTTAATTTCTCCATACAGACAGGTGAGGAATTTGCTCTCGAATTTATGAGAGATAGGGTGAATCTCGGGAAGCCTATGTTTCCGAATGTCAGTGACCCCAATTACACACCAGGTTATATGGATCTAAAAGGCATTTTAGGAATTAGTCATCCAGCATCAGAAAGTGGATCAGACATTTCAATGCTTTCAATGGTTGACAAATATCCAAAAGAGTTCGATAGAATGAACTCATCATTGCAGGGAGACAAAAGCAATTATGGGTCAATTCGATCAATACCAAGAACTTCAATGACTCAGGACAGTAGACAAGTTGTGCAGAAGTATGGTTCTTCTCGAGGTTCTGACAGCTCATCAATGCTATTGAAGTTCCTTTGCAGCTTTGGTGGTAGAATATTACCTCGACCAAGTGATGGAAAGCTAAGGTATGTTGGAGGTGATACACGTATTCTTCGTATAAGAAAGAACATATCTTGGCAGGAGCTCTTGCAGAAAGCATTATTAATCTATAATCAGGTTCATGCAATCAAGTATCAGCTTCCGGGGGAAGATCTTGATGCTTTGGTATCTGTGTCATGTGATGAGGATTTGCAGAATATGATGGAAGAATGTAACCATCTAGAAGATAGAGAAGGATCACAAAAGCCTAGGATGTTTTTGTTCTCATTGAGTGATTTGGAGGATGCTCAGTTTGGTCTCAATGGCTTGGGTGATGATTCTGAGATCCAATATGTTGTTGCTGTTAACGGCATGGACTTGGGATCAAGAAGAAACTCAACCCTGATCGGTATGAACTTTTCAGCAAATGATCTGCATGATTTGGACAGGCAGAACATTGAAAGGGAGACCGGTAAAGTTGCTGTTGATTCTGTAGGTGTCAACAATTCTCTATTGAATAACAAATTTGACTCATCACCAAATGCGGAATCCTCACAACCAGTGCTACCTACTTCCTCAAATTCTTATGCACAGTTTCACGGTGAACATGCAATGCACCATGGGGATCCTGTTGGTCAATATCATGTTACCAGATCTGTTATTGAAGACATTCCTACTACTATGCCTCCTCGTGCATTGATTAATCAAGATGGAGCTTTTAGCAAAGGCCATCCACCAGTTGGATTACCTGTACATAATTCTGAAATACCACCAGTGGTCACAAAAACGAAGGGTGATAATTTGATCGAAAAAGCAAGCGACCAAGGTAAAGTTATATCCTTGGAAACACCATCCTCAGCTCCTACTCAACTCTTTGATGGTTACATGAAAAATAATATTCCTGAAGCAACAGCTGCAGTCACTATGCCAGAGGGCTATCCGGTTCCTCCGACAAAAAAGGATCAGCCGCAGAACTATGAAGATGGTATTTCTACATCTAACAGTGGTTTTGCTCCCCCATATGTCGACTCCCATTCCAATGGTGTTGATTTTAGTTCACTTAACCCTCCTCCTCTTCCGGAAAGAGTTTACTATTCTGAAAGGATTCCTCGGGAGCAAGTAGATTTGCTGAATCGGTCCACCAAGTCAGATGATTTACATGGTTCTCAGTTTAACATTTCGGATTTACTTTCTGAGGCAAAGCCCTCAGATTCAGTTACAGGACCCGATGACAACTTGCATAATGGGAATCAGCCTCTCCGATCTGAGGAGTTGGGTGTTGCAGTGAAGCCTTTGCATGCTGATGGCTATCCTATTGATAATGGGACTGCCAAACATCAAATATACAAACATTTTCCTGATCCAAGTAGTCAGTTGAAGTCAAAGCTAACTGAGCATGTGAATTCCGAGTTGAAGAAGGTTCCCTCTGCTAAGCACCTTGAGGATCCTGCTTCATATCTTCCTGAGGTCGATTGGGGCGATACCACTGTTACAGAATCTAGTGAAAGTCGCATGGTGCAAGGACTACCTGTTTCTCTAAATGGAAACCAAACTGCCAAAGATGATTTTCAACCTCCTTCAAGTGTACCTTCAAAAACATCACAAGGTGACATTCTAATTGATATTGATGATCGATTTCCCCGTGAAGTGCTTAGTGACATGTATAAAGCTTTACTTGAAGAAGGTTTATCCGGTCGGCATCCATTAACCTCGGATGGAGTGGGTCTAAGCATAAATGTGAAAAATCATGAACCTACACCTTGGGAATATTTTCACAAACTGGCACAAGAAGGGCTCAATAATGTCTCTCTCATTGATCAGGATCATGTTGGGTTTTCACCTGCAGTAGAAAAAGTGGAAGGAGATGGTGGAGCTCAACTTGTTACGCCTCTCACAACTGGTGAAATGAATCAGAAAGACTTGCATGTGAGGGTTGGAGCAGAAACCACCATTCTAAAGCCAAATGATCCCCTAGTGAAGGATACTGAAAGTATGCAATTTAATGCTATGATGGAAAACATAAGAGCACAGGAATCAGGTTTTGAGGATGGCAATTTTGACACAAGAAATCGTACACCTCCTGTTGATCCTCCCTTAAGTGATATTGACCCGAATTCATTGCAGGTCATAATGAATGAAGATCTTGAAGAGCTGAAGGAGCTGGGTTCTGGTACCTTCGGGACTGTGTATCATGGAAAATGGCGTGGAACAGATGTTGCCATCAAAAGAATAAAGAAAAGCTGTTTCACTGGTCGATCGTCAGAGCAAGAGAGATTGACTGTAGAATTCTGGCGGGAAGCTGATATTCTTTCCAAGCTTCATCATCCAAATGTCGTGGCATTTTATGGTGTAGTTCAGGATGGACCTGGAGGAACAATGGCCACTGTTACAGAGTACATGGTGGATGGTTCTCTTCGGCATGTCTTGCTTCGCAAAGATAGGTATCTAGACCGGCGCAAGAGACTGATAATTGCTATGGATGCAGCTTTTGGAATGGAGTATTTACACTCGAAAAATATTGTTCATTTTGACTTAAAATGTGATAATTTGCTTGTGAACTTGAAAGATCCTTTACGGCCAATATGCAAGGTTGGTGATTTTGGCTTGTCAAAAATTAAGCGGAATACCTTGGTCTCTGGTGGTGTGCGGGGGACTCTTCCTTGGATGGCACCGGAGCTGCTTAATGGTAGCAGCAACAAGGTCTCAGAAAAGGTTGATGTTTTCTCCTTTGGCATAGTATTATGGGAGATTCTAACTGGTGAGGAGCCCTATGCCAATATGCACTATGGTGCGATCATAGGTGGGATTGTTAACAACACGTTAAGGCCAACAATTCCCAGTTACTGTGACTCAGAATGGCGAACGCTGATGGAGCAGTGCTGGGCACCCAATCCCGCAGTCAGACCTTCCTTCACTGAAATCGCGCGTAGATTGCGCGTGATGTCTGCAGCTGCTAGCCAAGCGAAGGCGCAGGGCCAAAAGGCGCCTAAGTGA 3531 0.4279 MEQSRFQKTIPSNTMEPRNGEFQPGLPPIMPDRPDDMHTIRRPPNVGMTQAKPVLNFSIQTGEEFALEFMRDRVNLGKPMFPNVSDPNYTPGYMDLKGILGISHPASESGSDISMLSMVDKYPKEFDRMNSSLQGDKSNYGSIRSIPRTSMTQDSRQVVQKYGSSRGSDSSSMLLKFLCSFGGRILPRPSDGKLRYVGGDTRILRIRKNISWQELLQKALLIYNQVHAIKYQLPGEDLDALVSVSCDEDLQNMMEECNHLEDREGSQKPRMFLFSLSDLEDAQFGLNGLGDDSEIQYVVAVNGMDLGSRRNSTLIGMNFSANDLHDLDRQNIERETGKVAVDSVGVNNSLLNNKFDSSPNAESSQPVLPTSSNSYAQFHGEHAMHHGDPVGQYHVTRSVIEDIPTTMPPRALINQDGAFSKGHPPVGLPVHNSEIPPVVTKTKGDNLIEKASDQGKVISLETPSSAPTQLFDGYMKNNIPEATAAVTMPEGYPVPPTKKDQPQNYEDGISTSNSGFAPPYVDSHSNGVDFSSLNPPPLPERVYYSERIPREQVDLLNRSTKSDDLHGSQFNISDLLSEAKPSDSVTGPDDNLHNGNQPLRSEELGVAVKPLHADGYPIDNGTAKHQIYKHFPDPSSQLKSKLTEHVNSELKKVPSAKHLEDPASYLPEVDWGDTTVTESSESRMVQGLPVSLNGNQTAKDDFQPPSSVPSKTSQGDILIDIDDRFPREVLSDMYKALLEEGLSGRHPLTSDGVGLSINVKNHEPTPWEYFHKLAQEGLNNVSLIDQDHVGFSPAVEKVEGDGGAQLVTPLTTGEMNQKDLHVRVGAETTILKPNDPLVKDTESMQFNAMMENIRAQESGFEDGNFDTRNRTPPVDPPLSDIDPNSLQVIMNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDSEWRTLMEQCWAPNPAVRPSFTEIARRLRVMSAAASQAKAQGQKAPK 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc973g00001 1176 CDD PB1_UP2 178 274 - -
Stsc973g00001 1176 PRINTS Tyrosine kinase catalytic domain signature 976 989 IPR001245 GO:0004672|GO:0006468
Stsc973g00001 1176 PRINTS Tyrosine kinase catalytic domain signature 1013 1031 IPR001245 GO:0004672|GO:0006468
Stsc973g00001 1176 PRINTS Tyrosine kinase catalytic domain signature 1084 1106 IPR001245 GO:0004672|GO:0006468
Stsc973g00001 1176 PRINTS Tyrosine kinase catalytic domain signature 1128 1150 IPR001245 GO:0004672|GO:0006468
Stsc973g00001 1176 SMART serkin_6 894 1160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc973g00001 1176 CDD STKc_MAP3K-like 900 1157 - -
Stsc973g00001 1176 MobiDBLite consensus disorder prediction 579 598 - -
Stsc973g00001 1176 MobiDBLite consensus disorder prediction 695 714 - -
Stsc973g00001 1176 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1019 1031 IPR008271 GO:0004672|GO:0006468
Stsc973g00001 1176 PANTHER SERINE-THREONINE PROTEIN KINASE 219 1158 - -
Stsc973g00001 1176 MobiDBLite consensus disorder prediction 1 27 - -
Stsc973g00001 1176 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 887 981 - -
Stsc973g00001 1176 MobiDBLite consensus disorder prediction 503 532 - -
Stsc973g00001 1176 Gene3D Transferase(Phosphotransferase) domain 1 982 1176 - -
Stsc973g00001 1176 Gene3D Phosphorylase Kinase; domain 1 887 981 - -
Stsc973g00001 1176 ProSitePatterns Protein kinases ATP-binding region signature. 900 925 IPR017441 GO:0005524
Stsc973g00001 1176 Gene3D - 193 275 - -
Stsc973g00001 1176 SUPERFAMILY Protein kinase-like (PK-like) 879 1156 IPR011009 -
Stsc973g00001 1176 MobiDBLite consensus disorder prediction 488 535 - -
Stsc973g00001 1176 Pfam PB1 domain 191 274 IPR000270 GO:0005515
Stsc973g00001 1176 SUPERFAMILY CAD & PB1 domains 190 277 - -
Stsc973g00001 1176 MobiDBLite consensus disorder prediction 352 371 - -
Stsc973g00001 1176 MobiDBLite consensus disorder prediction 1 19 - -
Stsc973g00001 1176 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 982 1174 - -
Stsc973g00001 1176 SMART PB1_new 189 276 IPR000270 GO:0005515
Stsc973g00001 1176 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 194 276 - -
Stsc973g00001 1176 Pfam Protein tyrosine and serine/threonine kinase 895 1157 IPR001245 GO:0004672|GO:0006468
Stsc973g00001 1176 ProSiteProfiles Protein kinase domain profile. 894 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc973g00001 1176 MobiDBLite consensus disorder prediction 860 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc973g00001 Stsc-Chr973 6955 13678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc973g00001 51 1176 MAP Kinase Kinase Kinase AT1G16270 48.887 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Stsc973g00001 PK_Tyr_Ser-Thr 1.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc973g00001 - - aip:107612789 2065.04