Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc970g00003 ATGGCTTTCCGCGACCACCTACCACACGAAATTACTTTTCAGCCCTTCACGGACGAGCAACATTTAAATCAGAACAGAGACATGCAGAGGATGCTGACTCTCTCCGGCGCCGGCGGCGGAGGAGCACCTCCGACGTGGATGAACAACGTCCGGCAGCAGAATTTCCTGCACCTTCAGCCGGACGCATCGTCGGCGCAAAACGAGGACGTCGGAGGCATGATGGCGGCGGCGGAGAAGAGCATGGATCATCGGAGCAAGCAGCAGCGGACGGCGACGGAGAGTAACAGCTTCGAGACGGAGGATATGGCGGAGTACAAGGCGGATATCCTAGGACATCCGCTATACGAGCAACTGCTGTCGGCACACGTGTCGTGTCTGAGAATTGCGACGCCAGTGGACCAGCTGCCGAGGATCGACGCGCAGTTGCAGGAGTCGGAGCGCGTGGTGGAGAAATACTCTGCGCATGGAAATAACGGTGTTGTTGATGAGAAGGATCTTGATCACTTCATGACACATTATGTTCTATTGCTTTGCGCTTTTAAAGAACAATTGCAACAACATGTACGTGTGCATGCCATGGAAGCAGTGATGGCTTGTTGGGAGCTCGAACAGTCTCTACAAAGCTTGACGGGTGTATCTCCGGGAGAAGGGACAGGTTCGACGATGTCGGACGACGAAGACGATCAGGCAGAGAGCAATGGGAACTTATTGTACGAAGGAAGCTTAGATGGCGGTGATAGTCTGAGCTTTGGGCCTCTTGTTCCAACTGAAACTGAAAGATCTCTAATGGAGCGTGTCCGCCAGGAGCTCAAGCACGAACTCAAACAGGGTTACAAGGATAAGATTGTTGACATAAGAGAAGAAATTCTGCGAAAGAGAAGAGCTGGGAAGCTTCCTGGGGATACAACCTCTCTCTTAAAAGCATGGTGGCAATCTCATTCTAAATGGCCCTATCCAACGGAAGAAGACAAGGCCAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAGAGGAAAAGAAATTGGCATACTAATTCTTCGTCCTCTACTGGCTCCAAAAGCAAGCGCAAGAATAATAATAATAATAATAATAATAATAATAACAATAATAATAGTGGTGCAGGTGAAACAAGTCACAACCAGAGCTTCATGTGA 1179 0.4919 MAFRDHLPHEITFQPFTDEQHLNQNRDMQRMLTLSGAGGGGAPPTWMNNVRQQNFLHLQPDASSAQNEDVGGMMAAAEKSMDHRSKQQRTATESNSFETEDMAEYKADILGHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLQESERVVEKYSAHGNNGVVDEKDLDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGSTMSDDEDDQAESNGNLLYEGSLDGGDSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNSSSSTGSKSKRKNNNNNNNNNNNNNNSGAGETSHNQSFM 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc970g00003 392 ProSiteProfiles 'Homeobox' domain profile. 289 352 IPR001356 GO:0003677
Stsc970g00003 392 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 371 - -
Stsc970g00003 392 Pfam KNOX1 domain 105 146 IPR005540 GO:0003677|GO:0005634
Stsc970g00003 392 FunFam homeobox protein knotted-1-like 3 isoform X1 290 351 - -
Stsc970g00003 392 Pfam ELK domain 269 290 IPR005539 GO:0003677
Stsc970g00003 392 Pfam Homeobox KN domain 309 348 IPR008422 GO:0003677|GO:0006355
Stsc970g00003 392 ProSiteProfiles ELK domain profile. 269 289 IPR005539 GO:0003677
Stsc970g00003 392 SMART HOX_1 291 356 IPR001356 GO:0003677
Stsc970g00003 392 Gene3D - 290 351 - -
Stsc970g00003 392 SMART ELK_2 269 290 IPR005539 GO:0003677
Stsc970g00003 392 SMART KNOX1_2 103 147 IPR005540 GO:0003677|GO:0005634
Stsc970g00003 392 CDD homeodomain 292 353 IPR001356 GO:0003677
Stsc970g00003 392 SUPERFAMILY Homeodomain-like 291 355 IPR009057 -
Stsc970g00003 392 SMART KNOX2_2 156 211 IPR005541 GO:0003677|GO:0005634
Stsc970g00003 392 MobiDBLite consensus disorder prediction 346 392 - -
Stsc970g00003 392 MobiDBLite consensus disorder prediction 78 98 - -
Stsc970g00003 392 Pfam KNOX2 domain 161 210 IPR005541 GO:0003677|GO:0005634
Stsc970g00003 392 MobiDBLite consensus disorder prediction 210 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc970g00003 Stsc-Chr970 8308 17118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc970g00003 103 372 Homeobox Transcription Factor Family AT5G11060 80.586 7.15e-161 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc970g00003 KNOX2 3.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc970g00003 - - gmx:100816347 567.77