Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc970g00001 ATGGCTGGAATGCTTCCTGGTGTTGAATCTGCTAGAAGGAGAAGACTCCATGGAAGTAAAGGATGCTTGGATTTACCATCTTCTTCCATGGCTTCAACACATAACACTACAAGGCGTTCTTCTTTGTGTTTATATGCTGCCAATCATGAGCCCCTTCATTCCCCTTTATCTTCTTCTCATAGAAGCGTGATCTACCAGCCTCAACCAGATTTGAATATGGTTGGAGAAGCCAGAGAAGCCAGAAGGAGATTGGATGATAAATTCAGATCACAAAGGAAATCGGAAAACAGAAGCATAAAGTGTGCTGAGAACAGAGCAGCAAGCATAGCAGAGTTGCACAAAGAAGTGTATGGTTCAAAGAAAATTGGTTCTAGAAGGTTCAGTTGGTCCAAATTGAGCTGGAAGGCCTCAGAACAAGAGGATTGTGCTGTTTGCTTGGAGTTATTCAAGATTGGAGAGACTCTAATGCATCTCCCTTGTGCCCATAGGTTCCATTCCAAATGCTTGAACCCATGGTTACAAAATAATTCACATTGTCCATGTTGCAGAACCGCAATTATTTAG 564 0.422 MAGMLPGVESARRRRLHGSKGCLDLPSSSMASTHNTTRRSSLCLYAANHEPLHSPLSSSHRSVIYQPQPDLNMVGEAREARRRLDDKFRSQRKSENRSIKCAENRAASIAELHKEVYGSKKIGSRRFSWSKLSWKASEQEDCAVCLELFKIGETLMHLPCAHRFHSKCLNPWLQNNSHCPCCRTAII 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc970g00001 187 SMART ring_2 142 182 IPR001841 -
Stsc970g00001 187 FunFam Zinc finger family protein 116 187 - -
Stsc970g00001 187 SUPERFAMILY RING/U-box 129 186 - -
Stsc970g00001 187 PANTHER SI:CH211-59O9.10 108 186 - -
Stsc970g00001 187 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Stsc970g00001 187 Pfam Ring finger domain 141 183 IPR001841 -
Stsc970g00001 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 186 IPR013083 -
Stsc970g00001 187 CDD RING-H2_PA-TM-RING 141 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc970g00001 Stsc-Chr970 1753 3080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc970g00001 112 186 C3H Transcription Factor Family AT1G49850 44.000 8.07e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc970g00001 - - gmx:100527583 259.996