Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc96g00022 ATGCTTGGGGTGTCACCTTTAAGGAGCAACAGAGATGATGAAATTCAAGGAGAAGACATGGAGACCTTATCCATTATTGGAGCATCTAAAGAGGGCGACTTTGCTGAATTATGGGAAAGCAGCATCAACTTTGATGATCTCTTCTCCGAAGATGGCTTGCCAAAACTTGAAATTGATCCTGACATCTTCTTTGACTTCTCATTCAGTGGGGATGACAATTCAACTATAGTCTTGAATGGTAATAATAAACTCCAAGATAATGATGATGATAGTGGTAGTGGTGATTGTGATAAATCGGCTTCTTCAGATTCCGGGTCGAGTAGAGGGGAGGAGATAATCAGCAAAAGAGATGGAAATGTGGTAGTCAACCCATCCCCAAACCCTAATAATAATAAAGAAGGTGTTCACAAAGGAAGAAAGAAATCATCTTCGTCATCATATCAATCAAAGAATCCTCATCAACAAACCAAGAAAAAGGTTAAGAAGGTGGACTGGAACCCAGAATTGCACAGACGATTTGTTGAGGCAGTGGAGCGGCTAGGAGTTAATAAAGCAGTGCCTTCAAAGATTCTAGAGATCATGGCGATTGACGGCCTCACCCGCCATAACATTGCTAGCCACCTTCAGAAATATCGATCACGTAGGAAGCATTTACTAGCTCGAGAAGCTGAAGTAACAAATCGGAGTCAAGGGAGCCAGAAGCATGGCGCAGGAGGTAGAGGGAAGAGAGAGGTCAGATTGGTCAACCCTTGGGTTCCACCCACCATTGGTTTTCCTCCAACTCCAATGCCGCTCCATTTTAGAACCTTACATGTATGGGGTCATCCCACCATGAACATATGGCCACCAAATCCTGGTCAGCTACAACCACCTGCAGCTTGGCCTTCACACCCTCACTTCCAAAGGGGTCATCAGAATGCAGTACCACCAGGAACACCATGTTTTTCACAACCTCTCACAACATCGAGATTTTGGTCTCCACCAACTACCACTGTGGCGGGTATCCCACCGGGTGCCATATGCAAAGTAGATCACGGCATGCTCAAGCCTCTAGTTGACTCGCATCTGTTAAAGGAAAGCATAGATGCTGCGATTGGTGATGTATTATCAAAACCATGGCTGCCACTGCCACTCGGGCTTAAAGCTCCAGCGATAGAGTGTGTGATGGGTGAGTTACAAAGACAAGGAATTCCAAATATCCCAACCTAA 1209 0.4516 MLGVSPLRSNRDDEIQGEDMETLSIIGASKEGDFAELWESSINFDDLFSEDGLPKLEIDPDIFFDFSFSGDDNSTIVLNGNNKLQDNDDDSGSGDCDKSASSDSGSSRGEEIISKRDGNVVVNPSPNPNNNKEGVHKGRKKSSSSSYQSKNPHQQTKKKVKKVDWNPELHRRFVEAVERLGVNKAVPSKILEIMAIDGLTRHNIASHLQKYRSRRKHLLAREAEVTNRSQGSQKHGAGGRGKREVRLVNPWVPPTIGFPPTPMPLHFRTLHVWGHPTMNIWPPNPGQLQPPAAWPSHPHFQRGHQNAVPPGTPCFSQPLTTSRFWSPPTTTVAGIPPGAICKVDHGMLKPLVDSHLLKESIDAAIGDVLSKPWLPLPLGLKAPAIECVMGELQRQGIPNIPT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc96g00022 402 MobiDBLite consensus disorder prediction 79 164 - -
Stsc96g00022 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 216 IPR017930 -
Stsc96g00022 402 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 401 IPR044825 GO:0003700|GO:0045893
Stsc96g00022 402 Gene3D - 156 218 - -
Stsc96g00022 402 FunFam Two-component response regulator 155 219 - -
Stsc96g00022 402 Pfam Myb-like DNA-binding domain 163 212 IPR001005 -
Stsc96g00022 402 MobiDBLite consensus disorder prediction 223 242 - -
Stsc96g00022 402 SUPERFAMILY Homeodomain-like 161 217 IPR009057 -
Stsc96g00022 402 NCBIfam myb-like DNA-binding domain, SHAQKYF class 161 214 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc96g00022 Stsc-Chr96 108438 110901 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc96g00022 1 282 G2-like Transcription Factor Family AT5G44190 36.364 2.16e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc96g00022 Myb_DNA-binding 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc96g00022 - - gmx:100790591 335.109