Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc96g00020 ATGCTTGCGGTGTCACCTTTGAGGAGCAACATAGATGATGAAATCAAAGGAGAAGACATGGAGACCTTATCCATTATTGGAGCGGTTGAAGATGACTTTGCTGAATTATCAGACGGCAACTTGTTGGAAAGCATCAACTTCGATGATCTCTTTGCCGGTGATGTCTTGCCGGATCTTGAGATGGATCCTGACATCTTTGCCGACTTCTCATCACTCAGCGGCGTTGAGAATTCATCGATAATCTTGAATGGGAACAATAAATTCCGTGGCGATGATTACGGCGGTGGTAGTGATGGTGGTTGTGGTAAATCCGCTTCTTCCGATGAGGAGATAGTAAGCAAAAGAGATGGGTCCGTGGTAGTGAATCCATCCCCTGATAATAATAATAATAACAATAATAAAGAAGGTGACAAAGGAAGAAAATCATCATCTTGTCAATCAAAGAATCCTAATCAAACCAAGAAAAAGGTTAAGAAGGTGGATTGGACTCCAGAATTGCACAGACGATTTGTTCAGGCGGTGGAGCAACTGGGAGTTGATAAAGCAGTGCCTTCAAGGATTCTAGAGATAATGGGAATTGACTGCCTCACCCGCCATAACATCGCTAGCCACCTACAAAAATATCGATCACATAGGAAGCATATACTAGCTCGAGAGGCTGAAGCAGCGAGTTGGAGTCAACGGAGGCAGATGTATGGTGGAGGTGGAGGAAGTAGAGGGAAGAGAGAGGTGACCCCTTGGATTGCACCAACCATTGGTTTTCCTCCAACTCCAACTCCAATGCCGCCCCATTTTAGACCCTTACATGTATGGGGTCATCCTACCATGCAGATGTGGCCGCCTAAACCTCATCAACCGCCGCCGCCTGCTCCTTGGCCTTCAGACCCTTCTTATTGGCACCACCCTCACCCCCAAAGGAGATTTGGGTCTCCACCAACTACCACCGTGGCGGGTATCCCACCACCACCGCGTGCCATCTACAAAGTAGATCACGGCATCCCCAAGCCCCTACTTGACTTCCATCCGTCAAAGGAGAGCGTAGATGCTGCAATTGGTGATGTATTATCAAAACCATGGCTGCCACTGCCACTTGGGCTTAAAGCTCCAGCGGTAGAGTGTGTGATGGGTGAGTTACAGAGACAAGGAATTCCAAAAATCCCACCCTCTTGTGCTTAA 1176 0.4762 MLAVSPLRSNIDDEIKGEDMETLSIIGAVEDDFAELSDGNLLESINFDDLFAGDVLPDLEMDPDIFADFSSLSGVENSSIILNGNNKFRGDDYGGGSDGGCGKSASSDEEIVSKRDGSVVVNPSPDNNNNNNNKEGDKGRKSSSCQSKNPNQTKKKVKKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHILAREAEAASWSQRRQMYGGGGGSRGKREVTPWIAPTIGFPPTPTPMPPHFRPLHVWGHPTMQMWPPKPHQPPPPAPWPSDPSYWHHPHPQRRFGSPPTTTVAGIPPPPRAIYKVDHGIPKPLLDFHPSKESVDAAIGDVLSKPWLPLPLGLKAPAVECVMGELQRQGIPKIPPSCA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc96g00020 391 FunFam Two-component response regulator 152 216 - -
Stsc96g00020 391 MobiDBLite consensus disorder prediction 97 160 - -
Stsc96g00020 391 SUPERFAMILY Homeodomain-like 158 214 IPR009057 -
Stsc96g00020 391 MobiDBLite consensus disorder prediction 281 298 - -
Stsc96g00020 391 Pfam Myb-like DNA-binding domain 160 209 IPR001005 -
Stsc96g00020 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 213 IPR017930 -
Stsc96g00020 391 MobiDBLite consensus disorder prediction 281 313 - -
Stsc96g00020 391 Gene3D - 153 215 - -
Stsc96g00020 391 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 390 IPR044825 GO:0003700|GO:0045893
Stsc96g00020 391 NCBIfam myb-like DNA-binding domain, SHAQKYF class 158 211 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc96g00020 Stsc-Chr96 101328 104065 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc96g00020 1 300 G2-like Transcription Factor Family AT5G44190 43.558 3.22e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc96g00020 Myb_DNA-binding 4.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc96g00020 - - pvy:116113383 399.053