Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc96g00019 ATGGGCGTGGATTATTACAAGGTCTTGCAGGTTGACAGAAATGCCACCGAAGACGACCTCAAGAAAGCTTACAGAAAGCTCGCCATGAAATGGCACCCCGACAAGAACCCCAACAACAAAAAAGATGCCGAAGCCAAGTTCAAGCAAATCTCCGAAGCATATGACGTGCTGAGTGATCCTCAGAAGAGAGCAATCTATGACCAGTATGGGGAAGAAGGTTTGAAGGGTCAGGTTCCACCGCCTGATGCTGGTTCTGGTGGCGGTGGATCCACCTTCTTTTCCACCGGTGACATTCCGACATCGTTTCGGTTCAATCCTCGAAACGCCGACGACATTTTTGCTGAGTTTTTTGGGTCTTCGAGCCCCTTTGGTGGCATGGGAAGGAGCAGTGGCGGCGGTGGCATGAGATCGAGGTTCCCTAATGGGATATTTGGTGATGACATGTTTGCATCTTTTGGTGAAGGAGGTGGTGGAGCAGGGGTGCACATGAGTCAGGGTGGTCCACGCAAGGCTCCCCCTATTGAGAACAAGCTCCCCTGCACTCTTGAAGAGATATATAAAGGGACCACCAAGAAGATGAAGATCTCTAGGGAAGTTATTGATGCTAGTGGCAAAACCATGCCAGTGGAGGAGATCTTGACGATTAATGTCAAGCCTGGTTGGAAGAAGGGAACAAAGATCACCTTCCCGGAGAAAGGAAATGAACAACCGAATGTAATACCTCCAGACCTTGTTTTCATTATCGATGAGAAACCACATGGCATCTTCACTCGAGATGGAAATGATCTAATCGCAACTCAGAAGATTTCTCTCGTGGAGGCCCTAACCGGATACACTGTAAACCTTACTACTTTGGATGGTAGAAACTTAACCATACCAATAAACAGTGTCATCCATCCAGATTACGAGGAGGTCGTCCCCAGGGAAGGGATGCCGCTTCCAAAGGATCCATCGAAGAAAGGGAACCTGAGGATTAAATTCAACATCAAGTTCCCAAGTCGGCTCACCGCCGACCAGAAAGCTGGAATCAAGAAACTCCTGGCTGCTTGA 1050 0.4857 MGVDYYKVLQVDRNATEDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAIYDQYGEEGLKGQVPPPDAGSGGGGSTFFSTGDIPTSFRFNPRNADDIFAEFFGSSSPFGGMGRSSGGGGMRSRFPNGIFGDDMFASFGEGGGGAGVHMSQGGPRKAPPIENKLPCTLEEIYKGTTKKMKISREVIDASGKTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNVIPPDLVFIIDEKPHGIFTRDGNDLIATQKISLVEALTGYTVNLTTLDGRNLTIPINSVIHPDYEEVVPREGMPLPKDPSKKGNLRIKFNIKFPSRLTADQKAGIKKLLAA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc96g00019 349 FunFam DnaJ subfamily B member 13 253 333 - -
Stsc96g00019 349 SUPERFAMILY HSP40/DnaJ peptide-binding domain 256 341 IPR008971 GO:0006457|GO:0051082
Stsc96g00019 349 Gene3D - 173 251 - -
Stsc96g00019 349 CDD DnaJ 4 59 IPR001623 -
Stsc96g00019 349 Gene3D DnaJ domain 3 130 IPR036869 -
Stsc96g00019 349 SUPERFAMILY HSP40/DnaJ peptide-binding domain 173 253 IPR008971 GO:0006457|GO:0051082
Stsc96g00019 349 SMART dnaj_3 3 62 IPR001623 -
Stsc96g00019 349 Pfam DnaJ C terminal domain 174 332 IPR002939 -
Stsc96g00019 349 Gene3D - 253 333 - -
Stsc96g00019 349 CDD DnaJ_C 172 335 - -
Stsc96g00019 349 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Stsc96g00019 349 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Stsc96g00019 349 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Stsc96g00019 349 PRINTS DnaJ domain signature 24 39 IPR001623 -
Stsc96g00019 349 PRINTS DnaJ domain signature 6 24 IPR001623 -
Stsc96g00019 349 PRINTS DnaJ domain signature 42 62 IPR001623 -
Stsc96g00019 349 PRINTS DnaJ domain signature 62 81 IPR001623 -
Stsc96g00019 349 FunFam DnaJ subfamily B member 13 3 127 - -
Stsc96g00019 349 FunFam Dnaj homolog subfamily b member 170 251 - -
Stsc96g00019 349 Pfam DnaJ domain 4 67 IPR001623 -
Stsc96g00019 349 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 347 - -
Stsc96g00019 349 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc96g00019 Stsc-Chr96 90529 93441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc96g00019 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 9.52e-10 58.2