Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc96g00018 ATGCCTCACCTATTCCTTCTCCTCCTCCTCTTTCTCTCACAAACACTCACAACACACTCTCTCAACCAACAAGGCCTCTTCCTCCTCCAAGCCAAGAACCAACTACTTCCATCCTCCTCCCTCCCCCTCCAAGACTGGAACCCCCGCGATGCCACCCCATGCAACTGGGCCCACGTCACCTGCCACCCCAACACCTCCCAAGTCACCTCCCTCTCCCTCTCCTCTCTCTCCCTCTCCGGCCCCTTCCCTCCCTCCCTCTGCCGCCTCCCCTCCCTCTCCTCTCTCTCCCTCGACAACAACCTCCTCATCTCCCCCCTCCCTTCCACCCTCTCCCTCTGCACCTCCCTCACCCACCTCAACCTCTCCCAAAACCTCTTCACCGGACCCCTCCCTTCTCTCCTCTCCTCCCTCCCCTCCCTCCTCCACCTCGACCTCTCCTTCAACAACTTCTCCTCCTCCATCCCCCCATCCTTCTCTCTCTTCCCCAACCTCCGCTCCCTCGACCTCTCCGCTAACCTCCTCAACGGAACCATCCCTTCTTTTCTCACCAACCTCACCACCTTAACCTCCCTCCACTTATCCTACAACCCTTTCCTCCCTTCTCCCATACCCCCTCACTTCGCCAACATGACCAACCTCCAGGACTTGTCTCTTTCCGGTTGCTCCCTCATCGGTCCGATTCCACCTTCATTAGGGAAGCTCTCCAATCTTCGAAACCTTGAACTAACCTACAACAACCTCCACGGCCCTATACCAGACTCTTTCATCTCCGGCCTCACCAGCATCGTCTTTCTCGAGCTCTACGGAAACTCCCTCTCTGGTCCATTGCCACGTGGCGATATCTGGAACAACCTCACCCACCTGGAAGGCTTCGATGCCTCCGGGAACAACTTGACTGGGACGATTCCCTCCGAGTTAACCCGTTTGAAGAAACTCGGTTCCCTCAACTTGTTCGATAACAACCTCCACGGCTCTCTGCCGGAGAGCATCGTCGAGGCTGAGAGCTTATACGAGCTCAAACTCTTCAACAACTCGCTCAACGGGACATTGCCGAGTCAACTCGGGAGCAACTCGCCGCTGCAGACACTCGATCTCTCGTACAACAACTTCTCCGGCGATATTCCGGCGGGTTTGTGCAGCCAGGGAGCGTTGGAGGACATCATGCTGATTTCCAATTCGTTCTCCGGGAGAATCCCCGATGGTCTCGGTGATTGCAGGAGCTTGATGAGGGTTCGAGTAAGGAACAATAACCTTTCGGGAACTGTTCCAGATGCTCTGTGGGGACTGCCACACCTTTATCTTCTTGAGCTTGACGAGAATTCCCTTTCTGGGTCGATTTCTACTTCTATTTCTGGCGCAACCAACATGTCAAGTTTGTCGCTTTCCTTCAACATGTTCTCAGGGTCTGTTCCTGACGAAATTGGGGATTTGGGCAACCTTGTTCAGTTTGTCGCCAGCCATAATAGCCTATCTGGTCAGATTCCAACGAGTGTTGTGAAATTGAGTCAGTTGGGGAAGCTTGTGATCAGTGATAATGAGCTTTGGGGTGAGATTCCTTTGGGGATTGGTGCTTTGGAGAAGCTTAATGATCTTGATTTGTCCAATAATAAGCTTAATGGTAACATTCCGGGTGAATTAGGAACCTTGCCGGTGCTTAATTATCTTGATCTTTCAGGGAATCTTCTCTCTGGCAGGATCCCAACTGAGCTAGAGAATTTGAAGCTTAATATGCTGAATTTGTCGAATAATCAGCTTTCAGGGGACATCCCTAAAGAATTTGACAATGAGAATTACAAGAATAGTTTTCTTGGAAATCCAGGGCTGTGTGGTTCTTTAATCTCTGAACTCTGTCAAAATTCAGGTGAGAACAAGAAGAGCAAGATAAAGTATGATTGGGTTTTCAGGTTGATATTTGTGATTGCTGGAATTGTGTTCGTTGTTGGGGTGACATGGTTTTGGCTCAAATTTAGGAGCATTAAGAAGATGAAGAAGAGAGTAATGCCTAACATGTTAAAATGGAGATCCTTCCACAAACTTGGATTCAGTGAGTGTGAGATTGTGAAGCTGCTGAATGAAGACAATGTAATAGGTAGCGGAGCATCAGGGAAAGTTTACAAGGTTGTTCTGAGCAATGGTGAAGCTGTGGCAGTGAAGAAACTATGGGGACCAAAAAATAAGAACAATGCTGCTTCTGAAAAAGATGGTTTTTTTGAAGCTGAGGTGGAAACATTGGGAAAAATCAGGCACAAGAATATTGTGAGGCTATGGTGTTGCTGCAACAGTGGTGATAGCAAGCTCTTAGTTTATGAGTACATGCCTAATGGGAGCCTTGCTGATTTGCTTCACAGTAGCAAGAGAAGCTTGTTGGATTGGCCAATTAGGTACAGAATTGCCATTGATGCTGCTGAGGGGCTTTCTTATTTGCATCACTATTGTGTTCCCCCTATTGTTCATAGGGATGTCAAATCCCACAATATATTGCTTGATGAAGAGTTCGGAGCAAAAGTTGCAGATTTTGGTGTTGCCAAAACTGTTAGGAGGGTTAGCCAAGGTGCAGAATCTATGTCTGCTGTTGCCGGATCTTATGGTTACATAGCACCAGAATATGCTTACACTCTAAGAGTGAATGAGAAGAGTGACATCTATAGTTTTGGAGTGGTAATTTTAGAATTGGTAAGTGGAAGAGCCCCACTTGATCCAGCATATGGTGAGAAAGATTTGGTGAAATGGGTTTCTTCTACATTGGAGCAGAGTGGAGAAGATCAAGTGATAGATCCAACTATGGATGTTAAGTACAAGGGAGAAATCATTAAGGTACTGAGCATAGGCCTTCTTTGCACAAACCCTCTTCCTATAAACCGGCCTTCAATGCGAAAGGTGGTAAAAATGCTGCATGAAGTTTCTGAAATTCCCAGAACAAAGAGTGGGAAATTGTCCCCTTATTATCAAGAAGAGGCCTCTGATAATGAAAATCAGCATGGAAACATGGTTTGA 2994 0.4776 MPHLFLLLLLFLSQTLTTHSLNQQGLFLLQAKNQLLPSSSLPLQDWNPRDATPCNWAHVTCHPNTSQVTSLSLSSLSLSGPFPPSLCRLPSLSSLSLDNNLLISPLPSTLSLCTSLTHLNLSQNLFTGPLPSLLSSLPSLLHLDLSFNNFSSSIPPSFSLFPNLRSLDLSANLLNGTIPSFLTNLTTLTSLHLSYNPFLPSPIPPHFANMTNLQDLSLSGCSLIGPIPPSLGKLSNLRNLELTYNNLHGPIPDSFISGLTSIVFLELYGNSLSGPLPRGDIWNNLTHLEGFDASGNNLTGTIPSELTRLKKLGSLNLFDNNLHGSLPESIVEAESLYELKLFNNSLNGTLPSQLGSNSPLQTLDLSYNNFSGDIPAGLCSQGALEDIMLISNSFSGRIPDGLGDCRSLMRVRVRNNNLSGTVPDALWGLPHLYLLELDENSLSGSISTSISGATNMSSLSLSFNMFSGSVPDEIGDLGNLVQFVASHNSLSGQIPTSVVKLSQLGKLVISDNELWGEIPLGIGALEKLNDLDLSNNKLNGNIPGELGTLPVLNYLDLSGNLLSGRIPTELENLKLNMLNLSNNQLSGDIPKEFDNENYKNSFLGNPGLCGSLISELCQNSGENKKSKIKYDWVFRLIFVIAGIVFVVGVTWFWLKFRSIKKMKKRVMPNMLKWRSFHKLGFSECEIVKLLNEDNVIGSGASGKVYKVVLSNGEAVAVKKLWGPKNKNNAASEKDGFFEAEVETLGKIRHKNIVRLWCCCNSGDSKLLVYEYMPNGSLADLLHSSKRSLLDWPIRYRIAIDAAEGLSYLHHYCVPPIVHRDVKSHNILLDEEFGAKVADFGVAKTVRRVSQGAESMSAVAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVSGRAPLDPAYGEKDLVKWVSSTLEQSGEDQVIDPTMDVKYKGEIIKVLSIGLLCTNPLPINRPSMRKVVKMLHEVSEIPRTKSGKLSPYYQEEASDNENQHGNMV 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc96g00018 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Stsc96g00018 997 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 180 276 - -
Stsc96g00018 997 MobiDBLite consensus disorder prediction 978 997 - -
Stsc96g00018 997 Pfam Leucine rich repeat 162 223 IPR001611 GO:0005515
Stsc96g00018 997 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Stsc96g00018 997 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Stsc96g00018 997 SMART serkin_6 690 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc96g00018 997 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
Stsc96g00018 997 FunFam Leucine-rich repeat receptor-like protein kinase 21 179 - -
Stsc96g00018 997 FunFam Leucine-rich repeat receptor-like protein kinase 772 979 - -
Stsc96g00018 997 SUPERFAMILY RNI-like 70 440 - -
Stsc96g00018 997 Gene3D Ribonuclease Inhibitor 21 178 IPR032675 -
Stsc96g00018 997 Gene3D Ribonuclease Inhibitor 179 280 IPR032675 -
Stsc96g00018 997 MobiDBLite consensus disorder prediction 980 997 - -
Stsc96g00018 997 SMART LRR_typ_2 309 333 IPR003591 -
Stsc96g00018 997 SMART LRR_typ_2 161 184 IPR003591 -
Stsc96g00018 997 SMART LRR_typ_2 354 381 IPR003591 -
Stsc96g00018 997 SMART LRR_typ_2 234 258 IPR003591 -
Stsc96g00018 997 SMART LRR_typ_2 525 549 IPR003591 -
Stsc96g00018 997 SMART LRR_typ_2 137 160 IPR003591 -
Stsc96g00018 997 SMART LRR_typ_2 185 209 IPR003591 -
Stsc96g00018 997 SMART LRR_typ_2 89 113 IPR003591 -
Stsc96g00018 997 SUPERFAMILY Protein kinase-like (PK-like) 690 964 IPR011009 -
Stsc96g00018 997 PRINTS Leucine-rich repeat signature 164 177 - -
Stsc96g00018 997 PRINTS Leucine-rich repeat signature 525 538 - -
Stsc96g00018 997 Gene3D Transferase(Phosphotransferase) domain 1 772 983 - -
Stsc96g00018 997 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 388 967 - -
Stsc96g00018 997 FunFam Receptor-like protein kinase HSL1 311 619 - -
Stsc96g00018 997 Pfam Protein kinase domain 692 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc96g00018 997 Gene3D Phosphorylase Kinase; domain 1 674 771 - -
Stsc96g00018 997 FunFam Receptor-like protein kinase HSL1 673 771 - -
Stsc96g00018 997 Gene3D Ribonuclease Inhibitor 281 626 IPR032675 -
Stsc96g00018 997 SUPERFAMILY L domain-like 378 616 - -
Stsc96g00018 997 ProSiteProfiles Protein kinase domain profile. 690 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc96g00018 Stsc-Chr96 83956 87276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc96g00018 17 989 Receptor kinase-like Gene Family AT1G28440 57.056 0.0 1065
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc96g00018 Pkinase 4.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc96g00018 - - aip:107613214 1528.07