Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc96g00015 ATGGATGATGGAGAAGTTGTTTCCAATGGTGGCTTCCCTCATCACAACATCAACCAAACTGATTCAACTTCTAACAATAATCCCCCTGCTTTGAAAAGGAAGAGAAACCTACCTGGAAACCCAGATCCTGAAGCAGAAGTGATAGCCTTATCACCGAAGACTCTGATGGCGACGAACAGGTTCGTGTGCGAGATATGCTTAAAGGGCTTCCAAAGGGATCAGAATCTGCAACTGCACAGAAGAGGACACAACCTTCCATGGAAGCTGAAGCAGAGAACAACAAAAGAAGTTAGGAAGAGAGTGTACGTGTGCCCGGAGAAAAGCTGCGTGCATAACCACCCGTCAAGGGCGTTAGGGGACTTAACAGGGATCAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTTCAGTCAGATTGGAAAGCACACTCCAAAACCTGTGGTACCAGGGAATACAAATGTGACTGTGGAACCATCTTTTCGCGGAGGGACAGCTTCATCACACACAGGGCTTTCTGTGATGCCTTAGCAGAAGAAACAGCTAGGGTTAATGCAGCATCAACCATAAACCACACATTATTAGGTGCTAACAACATTGCTTACACCCTCATGCAGCAGCAGCAGCACCACCACCAAAATCATCCCTTGCTTCCTAATAACATGTCAACCCATTTCTCTTCAATTTTCAAGCCAATTTCATCATCATCCACTACTGATGAAATAACCAGCAATAACAACCAAACATCTTCTAGACCCTTATCCCTTTGGAACATGACTCACCCTATTCATGACACAACATCAATAATGCCAATTACTCATCATCATAACAATTTGCATGATATTCATCATCAAATTGGATTTGCTACTACAAACCCTCCTCCACCATCTAATAACAATGCTTACCAACTAAATTGGGTGTTTGGGAACAAACTTCCCTCCAATAATGGAAGTGGCCACCAAGAGATAATAACTAGCACTACAAGTGCTAATTCACTTCCATTAATGAACATTGTTAAGAACAACAACAACAATAATAATGATAATCATGTTGCAAACCAGCTTGTAAGTGTTCCTTCCTTGTATAGCACCCAACACCAATCCCATGATCAAATAACATCATCAACCACAACAACAACATCTTCAGCAGCAGCAAACATGTCTGCCACAGCTTTATTGCAGAAAGCTGCTCAAATTGGATCAACTTCTTCAACTGATCCATCATCATTTCTTGGGAGCTTAGGTTTGAAATGCAGTAATAACAATAGTAACCAAGGGCAAGATGGGAATAACAACAAATTTTGTGGGATTTACAGTTCAAGTTGGAGTGAGCCAGAGAACTCTGCTGGTGATTTGACACAAATGCCCCCTGCAAAAAGAATGCGCGTGCAGAATGAAGATGCTAGTGCAGGGGGACAAACTAGGGATTTTCTTGGTGTTGGCGTGCAAACCATTTGCCACCCTTCTTCTATCACTGGCTGGATTTGA 1521 0.4287 MDDGEVVSNGGFPHHNINQTDSTSNNNPPALKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTTKEVRKRVYVCPEKSCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASTINHTLLGANNIAYTLMQQQQHHHQNHPLLPNNMSTHFSSIFKPISSSSTTDEITSNNNQTSSRPLSLWNMTHPIHDTTSIMPITHHHNNLHDIHHQIGFATTNPPPPSNNNAYQLNWVFGNKLPSNNGSGHQEIITSTTSANSLPLMNIVKNNNNNNNDNHVANQLVSVPSLYSTQHQSHDQITSSTTTTTSSAAANMSATALLQKAAQIGSTSSTDPSSFLGSLGLKCSNNNSNQGQDGNNNKFCGIYSSSWSEPENSAGDLTQMPPAKRMRVQNEDASAGGQTRDFLGVGVQTICHPSSITGWI 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc96g00015 506 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Stsc96g00015 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Stsc96g00015 506 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Stsc96g00015 506 MobiDBLite consensus disorder prediction 246 267 - -
Stsc96g00015 506 FunFam protein indeterminate-domain 12-like 40 108 - -
Stsc96g00015 506 Gene3D Classic Zinc Finger 94 185 - -
Stsc96g00015 506 MobiDBLite consensus disorder prediction 12 31 - -
Stsc96g00015 506 MobiDBLite consensus disorder prediction 1 44 - -
Stsc96g00015 506 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Stsc96g00015 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 494 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc96g00015 Stsc-Chr96 70120 72933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc96g00015 27 506 IDZ Gene Family AT1G03840 52.039 1.16e-150 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc96g00015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc96g00015 K25870 - gmx:100778666 545.428