LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc96g00006	ATGGCGCAATTGCCTCCTAAGATCCCAAATATGTCCCCGAGTTGGCCCGACTTCTCTTCTCCCCCGAAAATGCCACCAAATTTCGCATCTCCGCCGATGCTGCCGCCGCAAAACCTTGTGGCGGCGAACAATGGAAGCCAGTATCAGCTTCATCAGAACCCGTCCTGGGTGGACGAGTTCCTAGACTTCTCCTGCGCCAGGAGAGGCGCCCACCGCAGGTCGGTGAGCGACTCGATCACCTTCCTGGAGGCGCCTCTGCCGGCGGAGGAGGAGAATCTAAGAAGGAATAATGAGGAGAGTGAATTCGACAAGTTTGACGATGAGCAATTCATGTCCATGTTCACGGACGAGATTGCCGGGGGAATCCCGATGCCGCCGACGTTGTCTTCTTCAAACACTACGAGCGACGAGAAAGAAACGACGACGAGTTGCCAGAATAATGAGGTTGTGAAGAAGAAGAATTGGAAGGAGAAGGAGGAGGAGGAAGATGAGCATCATCATCACCACCAAAAGCAGCAAAAGAAATTGAATTTAAAGAATGAAGCGGATGAGGTTGAAAGCCAATGCAAAGAAGAAGAAGAAGAAACTGATAATAATGCGTTGGCCTCAAACAACACCGACAATAATAATGTTGCTTCTTCCAATGAACGAATTACTGACCCCAAGAGAGTCAAAAGAATCTTGGCAAATAGACAATCTGCACAAAGATCGCGAGTGAGGAAGCTGCAATACATATCAGAGTTAGAGAGAAGTGTAACTTCATTACAGGCGGAAGTTTCAGTGCTGTCACCGCGGGTTGCATTCTTGGATCATCAACGTTTGCTTCTAAATGTTGACAACAGTGCTATCAAGCAAAGAATCGCTGCCCTTGCCCAAGATAAGATTTTCAAAGACGCTCATCAAGAAGCACTGAAGAGGGAGATAGAGAGACTGAGGCAAGTGTATCACCAACAGAACCTTAAGAAGATGGAAAACAACAATAATAATAATGCACCATGCTCGTCGCCGTTGCGATCATCGCCGCCATCACCGTCACCAAAGGCGGGAATTATTGATGTTGTTCATCTGAATAACAGCATCATCAACATTGAAAAGGAACAGATTCTCAATGTTTGA	1116	0.4704	MAQLPPKIPNMSPSWPDFSSPPKMPPNFASPPMLPPQNLVAANNGSQYQLHQNPSWVDEFLDFSCARRGAHRRSVSDSITFLEAPLPAEEENLRRNNEESEFDKFDDEQFMSMFTDEIAGGIPMPPTLSSSNTTSDEKETTTSCQNNEVVKKKNWKEKEEEEDEHHHHHQKQQKKLNLKNEADEVESQCKEEEEETDNNALASNNTDNNNVASSNERITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNLKKMENNNNNNAPCSSPLRSSPPSPSPKAGIIDVVHLNNSIINIEKEQILNV	371

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc96g00006	371	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	225	240	IPR004827	GO:0003700\|GO:0006355
	Stsc96g00006	371	MobiDBLite	consensus disorder prediction	150	186	-	-
	Stsc96g00006	371	Coils	Coil	88	108	-	-
	Stsc96g00006	371	PANTHER	BASIC LEUCINE ZIPPER 34	1	339	-	-
	Stsc96g00006	371	Gene3D	-	221	273	-	-
	Stsc96g00006	371	FunFam	Basic leucine zipper 61	221	294	-	-
	Stsc96g00006	371	MobiDBLite	consensus disorder prediction	323	348	-	-
	Stsc96g00006	371	MobiDBLite	consensus disorder prediction	1	33	-	-
	Stsc96g00006	371	SMART	brlzneu	218	282	IPR004827	GO:0003700\|GO:0006355
	Stsc96g00006	371	MobiDBLite	consensus disorder prediction	199	217	-	-
	Stsc96g00006	371	MobiDBLite	consensus disorder prediction	125	149	-	-
	Stsc96g00006	371	Coils	Coil	168	195	-	-
	Stsc96g00006	371	CDD	bZIP_plant_RF2	223	273	IPR044759	GO:0003700\|GO:0006355
	Stsc96g00006	371	Coils	Coil	301	321	-	-
	Stsc96g00006	371	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	220	272	IPR004827	GO:0003700\|GO:0006355
	Stsc96g00006	371	Pfam	bZIP transcription factor	222	265	IPR004827	GO:0003700\|GO:0006355
	Stsc96g00006	371	SUPERFAMILY	Leucine zipper domain	222	276	IPR046347	GO:0003700\|GO:0006355
	Stsc96g00006	371	MobiDBLite	consensus disorder prediction	118	222	-	-
	Stsc96g00006	371	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc96g00006	Stsc-Chr96	29002	30902	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc96g00006	1	299	bZIP Transcription Factor Family	AT3G58120	54.114	1.59e-91	274

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Stsc96g00006		bZIP_1	3.7e-09	CL0018

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc96g00006	-		-	gmx:100815433	342.428