Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc96g00002 | ATGAGCGGTTACGATGTGGATGGAAACAGAAACCATGATGACTCATTCTTCACTTTCCATAACCCATCATCAGATAATAGAAGCTATTGGAACAAAAGAATCTTGGTCATGGCCATAGCTTCCTTAACAATCGTCATAATTGTTGTGCTAGCCCTTCACATCTATGCAAGGTTTGTTCTGAGACGCCAAGCTCGAAGACGATTCGCCATTCACCAACTCAGCCTCACCATACAAGCCCAAGCACATCATCACCACCATGAACATCACAACACTAGAGGCCTCGACCCTAACATCATAGCCACTCTCCCCATCTTAAAGAAGAAACAGCAACAAGATCATGGCGGCGAGTGTGCTGTGTGTTTGAGTGCTGTGGAAGATGAACAAGAGATAAGGTTGCTGCCAAATTGCAAGCACAGTTTCCATGTTGGTTGCATAGATACATGGCTAGCTTCGAATTCCACGTGTCCAATTTGTAGAACCAAGGCTGAACCACAACTTGAACCTCACACTCGTGAGAATCCTATTCTTGTTCTTGATGATGCTTCAATTCTACAACTTGAAGATACTTCCAATTCGGATGGTAATAACAATGGTGCTATTGTGGAGTCATCTTCAAAAAACGTTAGTGGTTCTTCTTCTGTTTCAAGATTCAGCAGCTCTTTTAGAAGGATACTACTAAGTAGGGATAGATCTTCTTCCAGAATCCAACCTTCAATAATTACCCATCTTGATGATCATGATCTTGAGAGCCAGTAG | 756 | 0.4246 | MSGYDVDGNRNHDDSFFTFHNPSSDNRSYWNKRILVMAIASLTIVIIVVLALHIYARFVLRRQARRRFAIHQLSLTIQAQAHHHHHEHHNTRGLDPNIIATLPILKKKQQQDHGGECAVCLSAVEDEQEIRLLPNCKHSFHVGCIDTWLASNSTCPICRTKAEPQLEPHTRENPILVLDDASILQLEDTSNSDGNNNGAIVESSSKNVSGSSSVSRFSSSFRRILLSRDRSSSRIQPSIITHLDDHDLESQ | 251 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc96g00002 | 251 | CDD | RING-H2_EL5-like | 116 | 159 | - | - | |
Stsc96g00002 | 251 | FunFam | E3 ubiquitin-protein ligase ATL6 | 82 | 165 | - | - | |
Stsc96g00002 | 251 | MobiDBLite | consensus disorder prediction | 187 | 214 | - | - | |
Stsc96g00002 | 251 | SMART | ring_2 | 117 | 158 | IPR001841 | - | |
Stsc96g00002 | 251 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 28 | 193 | - | - | |
Stsc96g00002 | 251 | SUPERFAMILY | RING/U-box | 116 | 165 | - | - | |
Stsc96g00002 | 251 | Pfam | Ring finger domain | 116 | 159 | IPR001841 | - | |
Stsc96g00002 | 251 | ProSiteProfiles | Zinc finger RING-type profile. | 117 | 159 | IPR001841 | - | |
Stsc96g00002 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 166 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc96g00002 | Stsc-Chr96 | 19078 | 19983 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc96g00002 | 1 | 235 | C3H Transcription Factor Family | AT2G42360 | 40.000 | 1.96e-47 | 155 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc96g00002 | K19038 | - | gmx:100780265 | 189.889 |