Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc96g00002 ATGAGCGGTTACGATGTGGATGGAAACAGAAACCATGATGACTCATTCTTCACTTTCCATAACCCATCATCAGATAATAGAAGCTATTGGAACAAAAGAATCTTGGTCATGGCCATAGCTTCCTTAACAATCGTCATAATTGTTGTGCTAGCCCTTCACATCTATGCAAGGTTTGTTCTGAGACGCCAAGCTCGAAGACGATTCGCCATTCACCAACTCAGCCTCACCATACAAGCCCAAGCACATCATCACCACCATGAACATCACAACACTAGAGGCCTCGACCCTAACATCATAGCCACTCTCCCCATCTTAAAGAAGAAACAGCAACAAGATCATGGCGGCGAGTGTGCTGTGTGTTTGAGTGCTGTGGAAGATGAACAAGAGATAAGGTTGCTGCCAAATTGCAAGCACAGTTTCCATGTTGGTTGCATAGATACATGGCTAGCTTCGAATTCCACGTGTCCAATTTGTAGAACCAAGGCTGAACCACAACTTGAACCTCACACTCGTGAGAATCCTATTCTTGTTCTTGATGATGCTTCAATTCTACAACTTGAAGATACTTCCAATTCGGATGGTAATAACAATGGTGCTATTGTGGAGTCATCTTCAAAAAACGTTAGTGGTTCTTCTTCTGTTTCAAGATTCAGCAGCTCTTTTAGAAGGATACTACTAAGTAGGGATAGATCTTCTTCCAGAATCCAACCTTCAATAATTACCCATCTTGATGATCATGATCTTGAGAGCCAGTAG 756 0.4246 MSGYDVDGNRNHDDSFFTFHNPSSDNRSYWNKRILVMAIASLTIVIIVVLALHIYARFVLRRQARRRFAIHQLSLTIQAQAHHHHHEHHNTRGLDPNIIATLPILKKKQQQDHGGECAVCLSAVEDEQEIRLLPNCKHSFHVGCIDTWLASNSTCPICRTKAEPQLEPHTRENPILVLDDASILQLEDTSNSDGNNNGAIVESSSKNVSGSSSVSRFSSSFRRILLSRDRSSSRIQPSIITHLDDHDLESQ 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc96g00002 251 CDD RING-H2_EL5-like 116 159 - -
Stsc96g00002 251 FunFam E3 ubiquitin-protein ligase ATL6 82 165 - -
Stsc96g00002 251 MobiDBLite consensus disorder prediction 187 214 - -
Stsc96g00002 251 SMART ring_2 117 158 IPR001841 -
Stsc96g00002 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 193 - -
Stsc96g00002 251 SUPERFAMILY RING/U-box 116 165 - -
Stsc96g00002 251 Pfam Ring finger domain 116 159 IPR001841 -
Stsc96g00002 251 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Stsc96g00002 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 166 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc96g00002 Stsc-Chr96 19078 19983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc96g00002 1 235 C3H Transcription Factor Family AT2G42360 40.000 1.96e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc96g00002 K19038 - gmx:100780265 189.889