Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc969g00004 ATGATAACCATGTCAAAACCTCTCTACTTCTTATTATGTGCATTCTTCTCCCCCATATTCATGACTTGTTATGCTGATACATCTTCAATTTGTGCTCCTTCTGCTTGTGGTAATGGAATCTCCATTAGGTACCCTTTCTGGATACGTTCCAGCACGGTGGCCGGAGAATTTTGCGGTTACCCGGATTTTGGTCTTCAATGTTCTAAAGATGGGTACCCTGTCCTCCAACTGGAAACTAACACATACTATGTTACAGACATAAACTATGTTAATCATTCAATCACACTTGTTGACATTGATGTGATGAATGTTTCATGTCCAAGGGTGAAAAACAATGTTTCCATAGGGAGCATACCTTTGTCTTTCAGTAACTTGGATAGGAACATCACTTTCTACTTCAATTGCACTTCTCAGCCTTCAGTGGCTGGTGCTGTGCCTATCAAGTGTTTGATAAATGGTCAGGGGAGGAAGTCTTATGTGTTTGAGGTTGGAAAGGATAATATTGGGTTTGTTCTTGATTGGAGCAGAGCTGTGGATTGTGCTGAGTGTGAGCTTTCTGATGGGTATTGTGCATATAATGGAACTACTAGGCAAACCATTTGTATGTGCAAAGATGGCAGAATTGTTGGCAAAAGTTGCAAAAAAGGAAATCGCCAGAGATGGATAGTCTTTGGCATAGTTGCTGCTTCTGTGGTTGGAGTGCTAGCCCTTGCCATGGCCTTTCTTTTCTATCAAAGGCAAAAGAAGACCAGTTATGGAATGTCTTCTGATCCATCATCTTTGGAAGACACTGAGAAGATAAGTCAATATAATGGAGTGCAACGTCACCGTTATCCTCCTACTGCATGGCACTACGCTAGTTCAGGTGCTGCCGGATTGTTGGCTACATGTTTTACGTGTAAGTCGTTAAGGATAAAGGGTAACCGAGATATTGAAACCTTCTTAGAAAATCATGGAGTCTTAACTCTGAAGAGATATAAATTCTCAGATGTGAAGAAAATGACCAACTCTTTCAAAGTTAAATTAGGACAAGGTGGTTTTGGTACTGTGTACAAGGGAAAGTTACCCAATGGTTCTGCTGTAGCTGTCAAAATGTTGACTCAATCCAAAGGAAATGGAGAAGAATTTATTAACGAGGTAGCTAGCATTAGTAGAACTTCCCATGTTAATGTTGTCACCCTTCTTGGCTTTTGCTTAGAAGGTCACCAAAAAGTTCTCATCTATGAGTTTATGTCTAATGGTTCCCTTGACAATTTTATTTTCAAAAAGGAACCTAAAAATACTCCACTCTTGAGTTGGGAAAAATTGTATCAAATTTCCACAGGCATAGCAAGAGGATTGGAGTATTTGCATAGAGGATGCAACATTCGAATTTTACATTTTGACATAAAACCACATAATATTCTTTTGGATGAAAGCTTTTGTCCTAAGATATCTGATTTTGGGCTAGCAAAGCTTTGTCCTAGAAAAGAAAGTCATGTTTCCATGTCCGAAACTAGAGGAACAATAGGGTACATAGCTCCAGAAGTGTTCAATAGACATTTTGGTAGAGTTTCACATAAATCCGATGTTTATAGCTTTGGAATGATGCTGATAGAAATGGTGGGGATGAAAGAGAACAACAAAATTGCAGAGACAGGTCAAACAAGTGAAAAGTATTTCCCGG 1666 0.3926 MITMSKPLYFLLCAFFSPIFMTCYADTSSICAPSACGNGISIRYPFWIRSSTVAGEFCGYPDFGLQCSKDGYPVLQLETNTYYVTDINYVNHSITLVDIDVMNVSCPRVKNNVSIGSIPLSFSNLDRNITFYFNCTSQPSVAGAVPIKCLINGQGRKSYVFEVGKDNIGFVLDWSRAVDCAECELSDGYCAYNGTTRQTICMCKDGRIVGKSCKKGNRQRWIVFGIVAASVVGVLALAMAFLFYQRQKKTSYGMSSDPSSLEDTEKISQYNGVQRHRYPPTAWHYASSGAAGLLATCFTCKSLRIKGNRDIETFLENHGVLTLKRYKFSDVKKMTNSFKVKLGQGGFGTVYKGKLPNGSAVAVKMLTQSKGNGEEFINEVASISRTSHVNVVTLLGFCLEGHQKVLIYEFMSNGSLDNFIFKKEPKNTPLLSWEKLYQISTGIARGLEYLHRGCNIRILHFDIKPHNILLDESFCPKISDFGLAKLCPRKESHVSMSETRGTIGYIAPEVFNRHFGRVSHKSDVYSFGMMLIEMVGMKENNKIAETGQTSEKYFP 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc969g00004 555 SMART serkin_6 336 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc969g00004 555 SUPERFAMILY Protein kinase-like (PK-like) 318 537 IPR011009 -
Stsc969g00004 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Stsc969g00004 555 Pfam Wall-associated receptor kinase C-terminal 169 206 IPR032872 -
Stsc969g00004 555 PANTHER RUST RESISTANCE KINASE LR10-RELATED 308 555 IPR045874 GO:0004672
Stsc969g00004 555 Pfam Wall-associated receptor kinase galacturonan-binding 31 98 IPR025287 GO:0030247
Stsc969g00004 555 FunFam Os07g0541700 protein 411 502 - -
Stsc969g00004 555 ProSiteProfiles Protein kinase domain profile. 336 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc969g00004 555 FunFam serine/threonine-protein kinase PBS1-like 307 410 - -
Stsc969g00004 555 Gene3D Phosphorylase Kinase; domain 1 301 410 - -
Stsc969g00004 555 Pfam Protein tyrosine and serine/threonine kinase 338 537 IPR001245 GO:0004672|GO:0006468
Stsc969g00004 555 Gene3D Transferase(Phosphotransferase) domain 1 411 552 - -
Stsc969g00004 555 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc969g00004 Stsc-Chr969 18062 22821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc969g00004 288 555 Receptor kinase-like Gene Family AT5G38280 57.196 7.73e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc969g00004 PK_Tyr_Ser-Thr 7.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc969g00004 - - ahf:112751085 534.258