Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc969g00001 ATGCGGATTCTTATCATCTCTTTGTGGTTGCTAACAGCTTTACCGCCGCCATGCCTCTCTCAAGTGTGTAGCCGGCAGCCATACAAGTGCGGAGGACTGCCTCAACTTTACTACCCATTTTGGGGGCAAACCCGGCCCCCTTACTGCGGCGGAGGCCACCAGTTCAACCTCACCTGCTACGCCTCCAACCGCACTTCCATTTCAATGCGGTCACAAGAATTCGAGGTGGTGGACATTGACACCCAAGCTCACACCATGACAATGGTGCCGCTAGAATACGATGTTTGCTCTCCTGACTTTGACTTTTCCCTCAGCCCCCTCTTCTGGTACGCCAGCACTGTCATCAACGTCACCGTATTCTACGATTGTCCCTCGGAGGCGGTAGTTTCTTCTTTGAACAACTTTACGTGCGGATCAGAGAATAATCACACTCATGATGGTGTCTACTATCTGGGTAGAGAAGATGAGTTGCTGCAACAGAATCTGGAGCTCGGGAAATGCCGGCGGCGAAAGCAAGTGCCGGTAGATGAGAATGCTCCTTCCCCTGATGGCGGTGGAGTTAATTCTCTGTATGCAGCTCTACAGATGGGGTTTCAGGTCAAGTATGTTGTCTCTGAGGAATGCATGACATGCTTGGCAACTCATGGTGTTTGCGGGAGGATTCATCATCATTTCATCTGTTCTGAACCTCATCACCAAAGTCTTACAGGTAGTGTGGTTGGATCGATACTAATTTGCATCACTTTTTGGCGCTTGTTGACATTATTCAAGTCATCAAGATGGCAAGAAATACTTTGGTTAAGGACTAATAAGAGGAACCAAGATATTGAGGCCTTCTTAAAAAGTCATGGAACTCTAACACTAAAGAGATATAAATTCTCAGAATTGAAGAAACTCACAAACTCCTTCAAATTTAAATTGGGTAAAGGTGGTTTTGGTGTTGTATACAAAGGAATGTTACCCAACGGATGCCCAGCGGCTATAAAGATTTTGAACCCATCCAAAGGAAACAATGAAGAATTTATTAACGAGGTAGCTAGCATCAGCAAAACTTCTCATATTAATGTCGTCACTCTTGTCGGATTTTGTTCGGAAGGTCATAGAAAAGCTCTCATTTATGAATTTATGTCCAATGGTTCTCTTGACAAATTTATTCGTGATAATAATAAACCACAAACCGCTCCATGGTTAAGTTGGAGCAAACTATATGAAATTGCAATAGGGATAGCTAAAGGGTTGGAGTACTTGCATAAAGGATGCAATACTCGAATCTTGCATCTTGACATAAAACCGCATAATATTCTTTTGGATGAGAATTTTTGTCCTAAGATATCAGATTTTGGACTATCAAAATTGTGCCCAAAAAAAGAGAGCATTATTTCTATATCAAATGCTCGAGGAACAATAGGATACATAGCTCCAGAAGTATTGAATAGAAATTTCGGTGGAATTTCTTACAAGTCTGATGTTTATAGCTACGGAATGATGTTACTAGAAATAGTTGGAGGAAGAAAGAAAAACGAGAATACAGAAGCAAGTCAGTCAAGTAGTGAATATTTTCCAGACTGGATATATAGAAGGCTTGAGGAAGGAACAACTCATCATGAGGAGGTAGCCACGGAAGAAAATGGGATCATTAGAAGAATGACTATGGTAGGTCTATGGTGCATTCAAGCTATGCCAAGTGATAGACCGACAATGAATAGAGTGTTAGATATGTTAGAAGGCAACATCAATACCATAGGAATGCCTCCAAAGCCTGTTATGTCTTCTCCGGTTGGATCAGTTATAGAATCAGCTTCAACTGTTAGCTGA 1815 0.4209 MRILIISLWLLTALPPPCLSQVCSRQPYKCGGLPQLYYPFWGQTRPPYCGGGHQFNLTCYASNRTSISMRSQEFEVVDIDTQAHTMTMVPLEYDVCSPDFDFSLSPLFWYASTVINVTVFYDCPSEAVVSSLNNFTCGSENNHTHDGVYYLGREDELLQQNLELGKCRRRKQVPVDENAPSPDGGGVNSLYAALQMGFQVKYVVSEECMTCLATHGVCGRIHHHFICSEPHHQSLTGSVVGSILICITFWRLLTLFKSSRWQEILWLRTNKRNQDIEAFLKSHGTLTLKRYKFSELKKLTNSFKFKLGKGGFGVVYKGMLPNGCPAAIKILNPSKGNNEEFINEVASISKTSHINVVTLVGFCSEGHRKALIYEFMSNGSLDKFIRDNNKPQTAPWLSWSKLYEIAIGIAKGLEYLHKGCNTRILHLDIKPHNILLDENFCPKISDFGLSKLCPKKESIISISNARGTIGYIAPEVLNRNFGGISYKSDVYSYGMMLLEIVGGRKKNENTEASQSSSEYFPDWIYRRLEEGTTHHEEVATEENGIIRRMTMVGLWCIQAMPSDRPTMNRVLDMLEGNINTIGMPPKPVMSSPVGSVIESASTVS 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc969g00001 604 Pfam Wall-associated receptor kinase C-terminal 155 227 IPR032872 -
Stsc969g00001 604 PANTHER RUST RESISTANCE KINASE LR10-RELATED 267 591 IPR045874 GO:0004672
Stsc969g00001 604 ProSiteProfiles Protein kinase domain profile. 301 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc969g00001 604 Pfam Wall-associated receptor kinase galacturonan-binding 23 89 IPR025287 GO:0030247
Stsc969g00001 604 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Stsc969g00001 604 Gene3D Transferase(Phosphotransferase) domain 1 376 581 - -
Stsc969g00001 604 FunFam PR5-like receptor kinase 376 585 - -
Stsc969g00001 604 Gene3D Phosphorylase Kinase; domain 1 265 375 - -
Stsc969g00001 604 FunFam serine/threonine-protein kinase PBS1-like 269 375 - -
Stsc969g00001 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Stsc969g00001 604 SUPERFAMILY Protein kinase-like (PK-like) 284 575 IPR011009 -
Stsc969g00001 604 Pfam Protein tyrosine and serine/threonine kinase 304 573 IPR001245 GO:0004672|GO:0006468
Stsc969g00001 604 SMART serkin_6 301 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc969g00001 Stsc-Chr969 8925 12368 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc969g00001 8 604 Receptor kinase-like Gene Family AT1G66910 38.602 6.23e-140 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc969g00001 PK_Tyr_Ser-Thr 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc969g00001 - - adu:107490378 952.97