Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc968g00003 ATGTTCCATAATGGAGCTCAAGCAGACCCTCAAATCAATTCACTCAAGAAATATTGCGGAAAGCAAATACCAGCAGCAGTCAACAGGCTGTTCAACTTCAACGATGTGGTATATGCAGCAATGGCAGACCTTAGAAACCAAAGCATCAACAACTACTTTGGCACTTCACATAAGGCCATGGGAGATGGCACTATTACTGTATATGCCATGTTCCAATGTAGAAGATACCTTTCTAACGCGGATTGCGCCGCCTGTTTCGCCGCAGCCAATAGGGATACCTGCACCCAAGTGGATAGTGTCCATATCGTCTACGATGGGTGCTTCCTTAGGTACGAACTATTCAGCTTCTTCAATGATACCGTAAGTGATGTGAATGGTGTTGTTTGTGGAAATCCATTTTCAAAGGTAGAAACCATTAACGATGAATTTAGTGAGGAAGCAAAAGAAGTGCTAAACAAGCTACAAATAGCAACACCCCAAATCCCTAATTATTATGCAGCTACAAAGACAGCATTGGTTGGTGGTGGTGCTATCTATGCTGTTGCACAATGTATTGAAATTGTTTCACAAAACGGTTGTCATGAATGCCTCAACCTTGGATTCAACAACATACAAGGTTGCCTTCCCTACACAGATGCTAGGGAATATGATGCTGGTTGTTTTATTAGATACTCTCAAAGACCATTTTTTGCTGATAACCAAACCATTGATATCGTCACACCCGTCTTAGACAAAGGTGATTCACACAAGAAATTGTACACTATTATAATGGGTGTTCTTGGAGGTGTAGCTCTTATTATTACAATGTTCTTTGCACTGTATCGTTTCAGTGCCAAATTTAGTTTCAAGAAAACTATGAGGGTCCCTAAAGGTGAAATATCAGGAGCAACCAATAAGTTGGAAGCTCCAATTAACTATAAATACAATGATTTAAAAGCTGCAACAAACAATTTTAGTGAAAAAAATAAACTGGGAGGGGGTGGCTTTGGCAATGTATACAAGGGGACTTTGAAAAACGGTAAAGTTATTGCGGTGAAGAAATTGTTCATTGGCCAGTTGAACAAGAAGGATGATGACTTTGAAACTGAAGTGAAGTTTCTAAGTAATGTTCATCACCGGAATCTTGTTAGACTCCTTGGATTTTCCAATAAGGGCCTAGACAGAATAATTGTTTATGAATATATGATCAATGGGAGTCTTGATAAATTCTTATTTGGTAAGAAAAAAGGTTGCCTAAATTGGAAGCAACGTTATGATATAGCTTTGGGAACAGCAAGGGGATTGGCCTATCTACATGAAGATTTTCCTGTTTTAATAATACATAGAGATATCAAAAGTAGCAATATTCTCTTGGATGATAAACTTCAACCCAAAATTGCTGATTTTGGCCTGGCAAGATTTCTAGCAAGTAACCAATCCAAACTCAAAACAAATTTTGCAGGAACATTGGGATATACAGCACCTGAATATATACTTCACGGCCAATTATCGCAAAAAGTTGATACATATAGTTATGGTATTGTAGTTCTTGAAATTGTAAGCGGACAAAAAAGTACTGAAATAAAAAAGGATAGCGATGATTATGAAGATGATGATATACATCTATATCTTATTAAACAAGCATGGGAGCTTTATGAGCAAGGCAGGCACATGGAATTAGTGGATAAGAATTTAGACCCTAATGAGTATGATTTGGAAGAAGTGAAAAGAGTTATAGAGATTGGTTTAATGTGCACACAAGCATCAGCAGCAAAGAGGCCAAAAATGTCTGAAGTAGTAGTCTTACTCACAAGTAAGGCCCAACTTGACCATTTACAACCTTCAATCCCTGTGTTTGTTGAGTCAAATTCGAAACCCCAAGGAAGCCTTTTTTACTCAAATGCAACTGTCTCTGATTCTATTGTATCAGCTAGATGA 1917 0.3792 MFHNGAQADPQINSLKKYCGKQIPAAVNRLFNFNDVVYAAMADLRNQSINNYFGTSHKAMGDGTITVYAMFQCRRYLSNADCAACFAAANRDTCTQVDSVHIVYDGCFLRYELFSFFNDTVSDVNGVVCGNPFSKVETINDEFSEEAKEVLNKLQIATPQIPNYYAATKTALVGGGAIYAVAQCIEIVSQNGCHECLNLGFNNIQGCLPYTDAREYDAGCFIRYSQRPFFADNQTIDIVTPVLDKGDSHKKLYTIIMGVLGGVALIITMFFALYRFSAKFSFKKTMRVPKGEISGATNKLEAPINYKYNDLKAATNNFSEKNKLGGGGFGNVYKGTLKNGKVIAVKKLFIGQLNKKDDDFETEVKFLSNVHHRNLVRLLGFSNKGLDRIIVYEYMINGSLDKFLFGKKKGCLNWKQRYDIALGTARGLAYLHEDFPVLIIHRDIKSSNILLDDKLQPKIADFGLARFLASNQSKLKTNFAGTLGYTAPEYILHGQLSQKVDTYSYGIVVLEIVSGQKSTEIKKDSDDYEDDDIHLYLIKQAWELYEQGRHMELVDKNLDPNEYDLEEVKRVIEIGLMCTQASAAKRPKMSEVVVLLTSKAQLDHLQPSIPVFVESNSKPQGSLFYSNATVSDSIVSAR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc968g00003 638 SMART serkin_6 318 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc968g00003 638 FunFam Cysteine-rich receptor-like protein kinase 2 124 229 - -
Stsc968g00003 638 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 68 618 - -
Stsc968g00003 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Stsc968g00003 638 SUPERFAMILY Protein kinase-like (PK-like) 304 626 IPR011009 -
Stsc968g00003 638 Gene3D Phosphorylase Kinase; domain 1 279 394 - -
Stsc968g00003 638 Pfam Salt stress response/antifungal 136 226 IPR002902 -
Stsc968g00003 638 Pfam Salt stress response/antifungal 32 112 IPR002902 -
Stsc968g00003 638 ProSiteProfiles Gnk2-homologous domain profile. 123 229 IPR002902 -
Stsc968g00003 638 Gene3D - 15 116 IPR038408 -
Stsc968g00003 638 Gene3D - 130 229 IPR038408 -
Stsc968g00003 638 ProSiteProfiles Gnk2-homologous domain profile. 15 116 IPR002902 -
Stsc968g00003 638 CDD STKc_IRAK 324 597 - -
Stsc968g00003 638 FunFam Cysteine-rich receptor-like protein kinase 2 395 604 - -
Stsc968g00003 638 FunFam Cysteine-rich receptor-like protein kinase 2 284 394 - -
Stsc968g00003 638 ProSitePatterns Protein kinases ATP-binding region signature. 324 347 IPR017441 GO:0005524
Stsc968g00003 638 Pfam Protein kinase domain 318 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc968g00003 638 Gene3D Transferase(Phosphotransferase) domain 1 395 608 - -
Stsc968g00003 638 ProSiteProfiles Protein kinase domain profile. 318 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc968g00003 Stsc-Chr968 15418 20470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc968g00003 12 614 Receptor kinase-like Gene Family AT1G70520 36.800 4.68e-118 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc968g00003 Pkinase 6.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc968g00003 - - ahf:112723943 785.408