Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc968g00002 ATGTTGCAACTTAATAAGGAAGTATCCATAAGTCTAATATGGTTGTGGTGGTGGTGGACAAGCCATCTTCACGGTACAGTTGTTGTTGCAGATCTAATAAACCAAGGGTGCAGCTCATACAACGAAACCAACTTGAAAAGCTTCTTCGCCAACATCAATGAAACGTTTTCGGAGTTGAGAAGTGATATAGTGAATCAGAGCAAGCACTTTGGAACTGCAAAGGAAGCAAGGGGAGAGGTTATCACATACACCATGTTTCAGTGTAGAAACTATCTTTCTCAAAGGGATTGTCTTGCTTGCTTCAACACCGCCACCGTCCAAATCCGAAATTGTTCGGACGGCAATGGTGCCAGAGTCATCTACGACGGTTGCTTCCTCAGGTATGAGAGCAATTTCTTCTTTAGCCAAACAACTGAAGCTGGGAATGGTGTAAAATGTGGAAACAAAACAGCCAAAGGAGGCAATGCTTTTGGTTCAGCTGCACAACAAGCTCTAATGAATCTCCAAACAGCAACACCAAAAATCAATGGATTTTATGCTGCCACCAAGACACAATTGCCAAATAATGTTGGTGCAATCTATGCTGTTGCACAATGTGTTGAAACTGCTACTCAAAGTGATTGCTTGGCATGCATGAATGTTGGATACAACAATTTGCAAACATGTCTTCCTCATTCAGATGGTAGGGCTTATGATGCTGGTTGTTTTATGAGATATTCACAGACTCCTTTCTTTGCTGATAATCAAACCATTGATATCACACCATACTTGGAACACGGAGGTTCAAGCAATAAGAAGTGGGCCATTATAGGTGGTGTTGGTGGAGGTGTAGCTCTTGTTGTGATCCTTCTTGCATTATTTGCATGGTATAGACATTCCAAAAAACCCAAAAGGGTTCCTAGAGGGGATATATTGGGAGCAACCGAGTTGAAGGGTCCAGTCAGTTACAACTATAAGGATTTGAAAGTTGCAACAAAAAATTTCAGTGAAGAAAATAAATTAGGAGAAGGAGGATTTGGTAATGTGTACAAGGGCACTCTTAAAAATGGGAAAGTTGTGGCAGTGAAGAAATTGATTTTGGGGCAAATTGAAAAAATGGAAGATCATTTTGAGAGTGAAGTAAAGCTTATTAGTAATGTGCATCATAGGAATCTGGTGAGACTTCTTGGTTGTTGTAGCAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAATAGTAGCCTTGACAGATTCTTATTTGGTAACAAGAAAGGATCCCTGAATTGGAAACAACGTTGTGACATAATTTTAGGGACAGCAAGGGGATTGGCATATCTTCATGAGGAATTCCATGTTTCTATTATACACAGAGATATAAAGACTGGAAACATTCTATTGGACGATGATCTTCAACCCAAAATTGCTGATTTTGGATTGGCAAGGCTTCTACCAGGAGATCAATCTCATCTTAGCACAAGATTTGCAGGAACATTAGGATATACAGCACCTGAATATGCAATTCATGGCCAATTATCAGAAAAAGCAGATACTTATAGTTATGGTATTGTAGTCCTAGAAATTATAAGTGGTCAAAAGAGCACCGAAATGAAGGTTGACGACAACGGACATGAATACCTTCTTCAACGAGCATGGAAACTGCATGAGCAAGGTATGCACATGGAGTTAGTGGACAAAAGCATTGATCCTTGTGAGTATGAAACAGAGGAAGTGAAGAAAATAATAGAAATTGCATTGATGTGCACTCAGGCATCAGCTTCAATGAGGCCAACAATGTCTGAAGTAGTTGTGTTGCTGAAAAGCAAAGGCTTGTTTGAGCACATGCAACCTTCAATGCCTGTGTTTGTTGAGTCAAATATGAAAGCCAGAGGAGACATTTCTGCTTCAACAGGTGCTTCCTCTTCTACAACTACTTCCAATGCTACTGTCACCACTTCTACGGTATCAGGAAGATGA 1959 0.4017 MLQLNKEVSISLIWLWWWWTSHLHGTVVVADLINQGCSSYNETNLKSFFANINETFSELRSDIVNQSKHFGTAKEARGEVITYTMFQCRNYLSQRDCLACFNTATVQIRNCSDGNGARVIYDGCFLRYESNFFFSQTTEAGNGVKCGNKTAKGGNAFGSAAQQALMNLQTATPKINGFYAATKTQLPNNVGAIYAVAQCVETATQSDCLACMNVGYNNLQTCLPHSDGRAYDAGCFMRYSQTPFFADNQTIDITPYLEHGGSSNKKWAIIGGVGGGVALVVILLALFAWYRHSKKPKRVPRGDILGATELKGPVSYNYKDLKVATKNFSEENKLGEGGFGNVYKGTLKNGKVVAVKKLILGQIEKMEDHFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGNKKGSLNWKQRCDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDDLQPKIADFGLARLLPGDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTEMKVDDNGHEYLLQRAWKLHEQGMHMELVDKSIDPCEYETEEVKKIIEIALMCTQASASMRPTMSEVVVLLKSKGLFEHMQPSMPVFVESNMKARGDISASTGASSSTTTSNATVTTSTVSGR 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc968g00002 652 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 83 637 - -
Stsc968g00002 652 MobiDBLite consensus disorder prediction 627 652 - -
Stsc968g00002 652 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524
Stsc968g00002 652 SMART serkin_6 328 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc968g00002 652 ProSiteProfiles Protein kinase domain profile. 328 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc968g00002 652 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Stsc968g00002 652 ProSiteProfiles Gnk2-homologous domain profile. 30 133 IPR002902 -
Stsc968g00002 652 FunFam Cysteine-rich receptor-like protein kinase 2 29 133 - -
Stsc968g00002 652 Gene3D Transferase(Phosphotransferase) domain 1 405 610 - -
Stsc968g00002 652 Gene3D - 142 244 IPR038408 -
Stsc968g00002 652 Gene3D - 29 133 IPR038408 -
Stsc968g00002 652 FunFam Cysteine-rich receptor-like protein kinase 2 141 244 - -
Stsc968g00002 652 Pfam Salt stress response/antifungal 146 241 IPR002902 -
Stsc968g00002 652 Pfam Salt stress response/antifungal 37 130 IPR002902 -
Stsc968g00002 652 CDD STKc_IRAK 334 601 - -
Stsc968g00002 652 Gene3D Phosphorylase Kinase; domain 1 300 404 - -
Stsc968g00002 652 FunFam Cysteine-rich receptor-like protein kinase 2 405 608 - -
Stsc968g00002 652 Pfam Protein kinase domain 329 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc968g00002 652 FunFam Cysteine-rich receptor-like protein kinase 2 293 404 - -
Stsc968g00002 652 SUPERFAMILY Protein kinase-like (PK-like) 312 612 IPR011009 -
Stsc968g00002 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc968g00002 Stsc-Chr968 5211 10974 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc968g00002 37 652 Receptor kinase-like Gene Family AT1G70520 37.002 5.89e-128 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc968g00002 Pkinase 3.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc968g00002 - - gmx:100801131 891.723