Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc964g00001 ATGGACAAGAAGCTATGCCTCTTGTTCATTTTCTCAGCATCAGTTTTGTTCATTGTTGGAGCTGAGCCAGTTGAAGATAAACAAGCCTTGCTTGATTTCCTTCACAACATGAACCACCCTCAGAATCTCAACTGGAATGAGAATTCTTCTGTATGCACCAGCTGGAGGGGAGTGACATGTGACTCCGGCCGGTCCAGAGTTATCGCGCTTCGGTTGCCAGCGGCCGGATTAAGTGGTCAAATCCCAAGCAACACTCTTAGTCACCTTTCTGCGCTTCAGGTTCTGAGTCTTCATTCAAATGGTATAACTGGTCCTTTCCCTGATGATTTCTCTGAGCTGAAGAACTTGACAAGCCTCTATCTCCAATCCAACAAGATTTCTGGCCCTCTGCCATTGGACTTCTCAGTTTGGAATAGCCTTACCATAGTGAATTTATCCAACAACTTTTTCAATGGTACCATACCTTCTTCAATTTTAAAATTGACTCGTCTCAGTTCATTAGTCCTTGCCAACAATTCACTTTCTGGTGAAATACCTGATCTCAATATCCCTAGTCTCAAAGAGCTTGATTTGGCAAACAATAATCTTAGTGGTGTTGTTCCTAATTCCCTTCTTAGATTTCCAATTAGAGACTTTGCTGGTAACAATAACCTTACCTATGGCAATGCACTTTCCCCTGCAATTCCCCTGCAACCGCCAAATGATCAACCAGCTGAGAAGAAACACAACAGAATCAGCGAGCCTACGCTGTTGGCTATCATAATTGGTGCTTGTGTGCTGGGATTTGCTGTTGTTGCAGCCTTCATGATTGTGTGCATGTATGAGAAAAATGACGAAAATGCACTGCCCGTTGAGGCCAAGAAAAAAGAAGTGCCTCTCAAGAAGCAATCTTCTGATAGCCAAGAGACTCAGGACAAGAACAAGATTGTGTTCTTTGAAGGATGTAAACTTGCATTTGACTTAGAAGATCTACTGAGAGCTTCTGCTGAGATTCTAGGGAAGGGGACATTCGGCACGACATATAAGGCTTCTCTAGATGAGAATACCACAGTGGTGGTGAAGAGGTTGAAAGAGGTTACAGTTGGAAAAAGAGAATTTGAACAGCAAATGGAAATTGTGGGGAGAATTAAGCATGAAAATGTGGATGCATTAAGGGCATATTACTACTCAAAGGAGGAGAAACTCATAGTATATGATTTCTATCAACAAGGCAGCGTTTCTGCACTATTGCATGGAAGAAGAGGGGAAGGAAGAATCCCTTTAGACTGGGAGAGCCGTCTAAGAATCGCAATAGGCGCGGCAAGAGGCATTGCTCACATCCATGCTCAACACGGAGGAAAACTAGTTCATGGAAACGTAAAAGCCTCAAACATCTTCCTCAACTCACAAGGATACGGTTGTGTATCAGACATTGGTTTGGCAATACTAATGAGTCCACCACCGCCAGCAACACGCGCTGCCGGCTACCGTGCCCCAGAAGTAACTGACACCAGAAAATCAACACATGCATCTGATGTCTATGCTTTCGGGGTCCTGCTACTTGAGCTTCTAACAGGGAAGTCACCAGTACCTGTTGCTGGAAGTGAGGAAGTTATGCATTTGGTTAGATGGGTGAATTCTGTGGTTAGAGAAGAATGGACTGCCGAGGTGTTTGATGTGGAGCTTCTGAGATATCCGAATATAGAGGAAGAAATGGTGGAGATGCTGCAAATAGGGATGGCTTGTGCCTCAAGAATACCGGATCAGAGACCGAAAATGACAGAGGTGGTGAGAATGATGGAGGAAATTCGTCGAGTAAATACTGGAAATGCACCATCCACTGAGTCTAGATCAGAAGTTTCTACCCCAACAAATTATGCACTTGACATGATGATGATGGCTTCTACATCAGTCCCACCACAGTGA 1905 0.4409 MDKKLCLLFIFSASVLFIVGAEPVEDKQALLDFLHNMNHPQNLNWNENSSVCTSWRGVTCDSGRSRVIALRLPAAGLSGQIPSNTLSHLSALQVLSLHSNGITGPFPDDFSELKNLTSLYLQSNKISGPLPLDFSVWNSLTIVNLSNNFFNGTIPSSILKLTRLSSLVLANNSLSGEIPDLNIPSLKELDLANNNLSGVVPNSLLRFPIRDFAGNNNLTYGNALSPAIPLQPPNDQPAEKKHNRISEPTLLAIIIGACVLGFAVVAAFMIVCMYEKNDENALPVEAKKKEVPLKKQSSDSQETQDKNKIVFFEGCKLAFDLEDLLRASAEILGKGTFGTTYKASLDENTTVVVKRLKEVTVGKREFEQQMEIVGRIKHENVDALRAYYYSKEEKLIVYDFYQQGSVSALLHGRRGEGRIPLDWESRLRIAIGAARGIAHIHAQHGGKLVHGNVKASNIFLNSQGYGCVSDIGLAILMSPPPPATRAAGYRAPEVTDTRKSTHASDVYAFGVLLLELLTGKSPVPVAGSEEVMHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACASRIPDQRPKMTEVVRMMEEIRRVNTGNAPSTESRSEVSTPTNYALDMMMMASTSVPPQ 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc964g00001 634 Gene3D Phosphorylase Kinase; domain 1 292 400 - -
Stsc964g00001 634 Pfam Leucine Rich Repeat 185 205 IPR001611 GO:0005515
Stsc964g00001 634 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 607 - -
Stsc964g00001 634 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Stsc964g00001 634 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Stsc964g00001 634 Pfam Leucine rich repeat 81 126 IPR001611 GO:0005515
Stsc964g00001 634 Pfam Protein tyrosine and serine/threonine kinase 330 592 IPR001245 GO:0004672|GO:0006468
Stsc964g00001 634 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Stsc964g00001 634 Gene3D Transferase(Phosphotransferase) domain 1 402 617 - -
Stsc964g00001 634 Gene3D Ribonuclease Inhibitor 24 231 IPR032675 -
Stsc964g00001 634 ProSiteProfiles Leucine-rich repeat profile. 185 206 IPR001611 GO:0005515
Stsc964g00001 634 FunFam Probable inactive receptor kinase RLK902 23 182 - -
Stsc964g00001 634 SUPERFAMILY L domain-like 27 207 - -
Stsc964g00001 634 ProSiteProfiles Protein kinase domain profile. 326 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc964g00001 634 FunFam pollen receptor-like kinase 1 295 400 - -
Stsc964g00001 634 PANTHER OS05G0588300 PROTEIN 9 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc964g00001 Stsc-Chr964 12105 14566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc964g00001 15 617 Receptor kinase-like Gene Family AT4G23740 56.822 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc964g00001 PK_Tyr_Ser-Thr 3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc964g00001 - - gmx:100809359 906.746